Ion Mandoiu

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Alexander ZelikovskyDistinguished University Professor at Georgia State UniversityVerified email at gsu.edu
Andrew B. KahngProfessor of CSE and ECE, UC San DiegoVerified email at eng.ucsd.edu
Pramod K Srivastava PhD MDUniversity of Connecticut School of MedicineVerified email at uchc.edu
Sahar AL SeesiAssociate Professor, Computer Science, Southern Connecticut State UniversityVerified email at southernct.edu
Serghei MangulAssistant Professor at USCVerified email at usc.edu
Pavel SkumsUniversity of ConnecticutVerified email at uconn.edu
Bassam TorkAssistant Professor of Computer Science, Al-Quds Open UniversityVerified email at qou.edu
Marmar MoussaSchool of Computer Science, Gallogly College of Engineering, University of OklahomaVerified email at ou.edu
Craig NelsonAssociate Professor of Genetics and Genomics, MCB, UCONNVerified email at uconn.edu
Tatiana Shcheglova, PhDResearch AssociateVerified email at uchc.edu
James LindsayAssociate Director of Knowledge Systems Group, Dana-Farber Cancer InstituteVerified email at dfci.harvard.edu
Jorge DuitamaUniversidad de los AndesVerified email at uniandes.edu.co
Nicholas MancusoAssistant Professor at Keck School of Medicine, University of Southern CaliforniaVerified email at med.usc.edu
Brian M. BakerDepartment of Chemistry & Biochemistry, University of Notre DameVerified email at nd.edu
Sanguthevar RajasekaranProfessor of Computer Science and Engineering, University of ConnecticutVerified email at engr.uconn.edu
Adrian CaciulaColumbia UniversityVerified email at columbia.edu
Alexander ArtyomenkoBioinformatics Scientist at Guardant Health Inc.Verified email at guardanthealth.com
Bogdan PasaniucProfessor at UCLAVerified email at ucla.edu
Kishori M KonwarComputer Science and Al Lab, Massachusetts Inst. of TechnologyVerified email at mit.edu
Vijay VaziraniDistinguished Professor, Dept. of Computer Science, University of California, Irvine.Verified email at ics.uci.edu

Ion Mandoiu

University of Connecticut

Verified email at engr.uconn.edu - Homepage

Algorithms bioinformatics computational genomics immunogenomics


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Eleven grand challenges in single-cell data science D Lähnemann, J Köster, E Szczurek, DJ McCarthy, SC Hicks, ... Genome biology 21 (1), 1-35, 2020	853	2020
Genomic and bioinformatic profiling of mutational neoepitopes reveals new rules to predict anticancer immunogenicity F Duan, J Duitama, S Al Seesi, CM Ayres, SA Corcelli, AP Pawashe, ... Journal of Experimental Medicine 211 (11), 2231-2248, 2014	399	2014
Key parameters of tumor epitope immunogenicity revealed through a consortium approach improve neoantigen prediction DK Wells, MM van Buuren, KK Dang, VM Hubbard-Lucey, KCF Sheehan, ... Cell 183 (3), 818-834. e13, 2020	292	2020
Selecting forwarding neighbors in wireless ad hoc networks G Călinescu, I Măndoiu, PJ Wan, A Zelikovsky Proceedings of the 5th international workshop on Discrete algorithms and …, 2001	254	2001
Estimation of alternative splicing isoform frequencies from RNA-Seq data M Nicolae, S Mangul, II Măndoiu, A Zelikovsky Algorithms for molecular biology 6, 1-13, 2011	249	2011
Genome sequence of an Australian kangaroo, Macropus eugenii, provides insight into the evolution of mammalian reproduction and development MB Renfree, AT Papenfuss, JE Deakin, J Lindsay, T Heider, K Belov, ... Genome biology 12 (8), 1-26, 2011	202	2011
Inferring viral quasispecies spectra from 454 pyrosequencing reads I Astrovskaya, B Tork, S Mangul, K Westbrooks, I Măndoiu, P Balfe, ... BMC bioinformatics 12 (6), 1-10, 2011	148	2011
Symmetric connectivity with minimum power consumption in radio networks G Călinescu, II Măndoiu, A Zelikovsky Foundations of Information Technology in the Era of Network and Mobile …, 2002	145	2002
Power efficient range assignment in ad-hoc wireless networks E Althaus, G Calinescu, II Mandoiu, S Prasad, N Tchervenski, ... 2003 IEEE Wireless Communications and Networking, 2003. WCNC 2003. 3, 1889-1894, 2003	114	2003
Power efficient range assignment for symmetric connectivity in static ad hoc wireless networks E Althaus, G Călinescu, II Măndoiu, S Prasad, N Tchervenski, ... Wireless Networks 12, 287-299, 2006	111	2006
Highly scalable algorithms for rectilinear and octilinear Steiner trees AB Kahng, II Măndoiu, AZ Zelikovsky Proceedings of the 2003 Asia and South Pacific Design Automation Conference …, 2003	105	2003
Identification of mammalian orthologs using local synteny J Jun, II Mandoiu, CE Nelson BMC genomics 10 (1), 1-13, 2009	85	2009
Non-tree routing for reliability and yield improvement AB Kahng, B Liu, II Mǎandoiu Proceedings of the 2002 IEEE/ACM international conference on Computer-aided …, 2002	78	2002
The Y architecture for on-chip interconnect: analysis and methodology H Chen, CK Cheng, AB Kahng, II Mandoiu, Q Wang, B Yao IEEE Transactions on Computer-Aided Design of Integrated Circuits and …, 2005	74	2005
DNA-BAR: distinguisher selection for DNA barcoding B DasGupta, KM Konwar, II Măndoiu, AA Shvartsman Bioinformatics 21 (16), 3424-3426, 2005	63	2005
Area under the curve as a tool to measure kinetics of tumor growth in experimental animals F Duan, S Simeone, R Wu, J Grady, I Mandoiu, PK Srivastava Journal of immunological methods 382 (1-2), 224-228, 2012	61	2012
Minimum multicolored subgraph problem in multiplex PCR primer set selection and population haplotyping MT Hajiaghayi, K Jain, LC Lau, II Măndoiu, A Russell, VV Vazirani Computational Science–ICCS 2006: 6th International Conference, Reading, UK …, 2006	61*	2006
Towards accurate detection and genotyping of expressed variants from whole transcriptome sequencing data J Duitama, PK Srivastava, II Măndoiu BMC genomics 13, 1-10, 2012	60	2012
Bootstrap-based differential gene expression analysis for RNA-Seq data with and without replicates S Al Seesi, YT Tiagueu, A Zelikovsky, II Măndoiu BMC genomics 15 (8), 1-10, 2014	59	2014
A new heuristic for rectilinear Steiner trees II Mandoiu, VV Vazirani, JL Ganley IEEE Transactions on Computer-Aided Design of Integrated Circuits and …, 2000	59	2000

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