Ivan Kulakovskiy

Cited by

	All	Since 2019
Citations	5943	3977
h-index	29	25
i10-index	55	48

760

380

190

570

2011201220132014201520162017201820192020202120222023202425 31 74 153 277 373 468 516 535 638 723 741 748 588

Public access

View all

21 articles

0 articles*

available

not available

Based on funding mandates

Co-authors

Vsevolod MakeevCancer Research UK, ManchesterVerified email at manchester.ac.uk
Ilya VorontsovVavilov Institute of General GeneticsVerified email at vigg.ru
Yulia A MedvedevaResearch Center of Biotechnology RASVerified email at biengi.ac.ru
Fedor KolpakovBiosoft.RuVerified email at biosoft.ru
Eliseeva IrinaInstitute of protein research RASVerified email at vega.protres.ru
Artem KasianovBIOPOLIS-CiBioVerified email at cibio.up.pt
Sergey DmitrievBelozersky Institute of Physico-Chemical Biology, Moscow State UniversityVerified email at belozersky.msu.ru
Alexander Favorovresearch associate@oncbiostat.jhu.edu; senior fellow reasearcher@vigg.ruVerified email at sensi.org
Dmitry KuprashEngelhardt Institute of Molecular BiologyVerified email at eimb.ru
Anton SchwartzDepartment of Human Biology of the University of HaifaVerified email at univ.haifa.ac.il
Semyon KolmykovInstitute of Cytology and Genetics SB RAS, Novosibirsk, Russian FederationVerified email at bionet.nsc.ru
Marina FridmanResearcher of Vavilov Institute of General GeneticsVerified email at vigg.ru
Aleksandra S. AnisimovaMax Perutz Labs, University of Vienna, Medical University of Vienna, Vienna BioCenter (VBC), ViennaVerified email at univie.ac.at
Aleksey PeninThe Institute for Information Transmission Problems of the Russian Academy of SciencesVerified email at de.bio.msu.ru
Dmitry PenzarVavilov Institute of General Genetics, FBB Lomonosov MSUVerified email at kodomo.fbb.msu.ru
Grigory KhimulyaPrivateVerified email at alumni.harvard.edu
Valentina BoevaAssistant Prof., ETH Zürich, Department of Computer ScienceVerified email at inf.ethz.ch
Eugene F. BaulinPostdoc, IIMCB in WarsawVerified email at iimcb.gov.pl
Vadim GladyshevProfessor of Medicine, Brigham and Women's Hospital, Harvard Medical SchoolVerified email at rics.bwh.harvard.edu
Artyom A. EgorovLund University, Department of Experimental Medical Science | PhD studentVerified email at med.lu.se

Ivan Kulakovskiy

Institute of Protein Research RAS

Verified email at vigg.ru - Homepage

bioinformatics gene regulation sequence analysis high-throughput sequencing


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
A promoter-level mammalian expression atlas TF Consortium Nature 507 (7493), 462-470, 2014	1757	2014
HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis IV Kulakovskiy, IE Vorontsov, IS Yevshin, RN Sharipov, AD Fedorova, ... Nucleic acids research 46 (D1), D252-D259, 2018	805	2018
Effects of cytosine methylation on transcription factor binding sites YA Medvedeva, AM Khamis, IV Kulakovskiy, W Ba-Alawi, MSI Bhuyan, ... BMC Genomics 15 (1), 119, 2014	301	2014
EpiFactors: a comprehensive database of human epigenetic factors and complexes YA Medvedeva, A Lennartsson, R Ehsani, IV Kulakovskiy, IE Vorontsov, ... Database 2015, bav067, 2015	294	2015
HOCOMOCO: a comprehensive collection of human transcription factor binding sites models IV Kulakovskiy, YA Medvedeva, U Schaefer, AS Kasianov, IE Vorontsov, ... Nucleic Acids Research 41 (D1), D195-D202, 2013	289	2013
HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models IV Kulakovskiy, IE Vorontsov, IS Yevshin, AV Soboleva, AS Kasianov, ... Nucleic acids research 44 (D1), D116-D125, 2016	259	2016
Deep and wide digging for binding motifs in ChIP-Seq data IV Kulakovskiy, VA Boeva, AV Favorov, VJ Makeev Bioinformatics 26 (20), 2622-2623, 2010	186	2010
GTRD: an integrated view of transcription regulation S Kolmykov, I Yevshin, M Kulyashov, R Sharipov, Y Kondrakhin, ... Nucleic Acids Research 49 (D1), D104-D111, 2021	185	2021
Functional annotation of human long noncoding RNAs via molecular phenotyping JA Ramilowski, CW Yip, S Agrawal, JC Chang, Y Ciani, IV Kulakovskiy, ... Genome Research 30 (7), 1060-1072, 2020	146	2020
Intergenic, gene terminal, and intragenic CpG islands in the human genome Y Medvedeva, M Fridman, N Oparina, D Malko, E Ermakova, ... BMC genomics 11 (1), 48, 2010	111	2010
Multifaceted deregulation of gene expression and protein synthesis with age AS Anisimova, MB Meerson, MV Gerashchenko, IV Kulakovskiy, ... PNAS 117 (27), 15581-15590, 2020	98	2020
Jaccard index based similarity measure to compare transcription factor binding site models IE Vorontsov, IV Kulakovskiy, VJ Makeev Algorithms for Molecular Biology 8 (1), 23, 2013	89	2013
Architectural proteins Pita, Zw5, and ZIPIC contain homodimerization domain and support specific long-range interactions in Drosophila N Zolotarev, A Fedotova, O Kyrchanova, A Bonchuk, AA Penin, AS Lando, ... Nucleic acids research 44 (15), 7228-7241, 2016	81	2016
From binding motifs in ChIP-seq data to improved models of transcription factor binding sites I KULAKOVSKIY, V LEVITSKY, D OSHCHEPKOV, L BRYZGALOV, ... Journal of Bioinformatics and Computational Biology, 2013	81	2013
Landscape of allele-specific transcription factor binding in the human genome S Abramov, A Boytsov, D Bykova, DD Penzar, I Yevshin, SK Kolmykov, ... Nature Communications 12 (1), 1-15, 2021	77	2021
Single-Cell Analyses of ESCs Reveal Alternative Pluripotent Cell States and Molecular Mechanisms that Control Self-Renewal D Papatsenko, H Darr, IV Kulakovskiy, A Waghray, VJ Makeev, ... Stem Cell Reports 5 (2), 207-220, 2015	57	2015
Insights gained from a comprehensive all-against-all transcription factor binding motif benchmarking study G Ambrosini, I Vorontsov, D Penzar, R Groux, O Fornes, DD Nikolaeva, ... Genome biology 21, 1-18, 2020	54	2020
High‐quality genome assembly of Capsella bursa‐pastoris reveals asymmetry of regulatory elements at early stages of polyploid genome evolution AS Kasianov, AV Klepikova, IV Kulakovskiy, ES Gerasimov, AV Fedotova, ... The Plant Journal 91 (2), 278-291, 2017	50	2017
Application of experimentally verified transcription factor binding sites models for computational analysis of ChIP-Seq data VG Levitsky, IV Kulakovskiy, NI Ershov, DY Oshchepkov, VJ Makeev, ... BMC genomics 15 (1), 80, 2014	48	2014
Integration of multiple epigenomic marks improves prediction of variant impact in saturation mutagenesis reporter assay D Shigaki, O Adato, AN Adhikari, S Dong, A Hawkins‐Hooker, F Inoue, ... Human mutation 40 (9), 1280-1291, 2019	47	2019

The system can't perform the operation now. Try again later.

Articles 1–20

Citations per year

Duplicate citations

Merged citations

Add co-authorsCo-authors

Follow

Cited by

Co-authors