Подписаться
Ivan Kulakovskiy
Ivan Kulakovskiy
Institute of Protein Research RAS
Подтвержден адрес электронной почты в домене vigg.ru - Главная страница
Название
Процитировано
Процитировано
Год
A promoter-level mammalian expression atlas
TF Consortium
Nature 507 (7493), 462-470, 2014
14242014
HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis
IV Kulakovskiy, IE Vorontsov, IS Yevshin, RN Sharipov, AD Fedorova, ...
Nucleic acids research 46 (D1), D252-D259, 2018
4682018
HOCOMOCO: a comprehensive collection of human transcription factor binding sites models
IV Kulakovskiy, YA Medvedeva, U Schaefer, AS Kasianov, IE Vorontsov, ...
Nucleic Acids Research 41 (D1), D195-D202, 2013
2552013
Effects of cytosine methylation on transcription factor binding sites
YA Medvedeva, AM Khamis, IV Kulakovskiy, W Ba-Alawi, MSI Bhuyan, ...
BMC Genomics 15 (1), 119, 2014
2322014
HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models
IV Kulakovskiy, IE Vorontsov, IS Yevshin, AV Soboleva, AS Kasianov, ...
Nucleic acids research 44 (D1), D116-D125, 2016
2202016
EpiFactors: a comprehensive database of human epigenetic factors and complexes
YA Medvedeva, A Lennartsson, R Ehsani, IV Kulakovskiy, IE Vorontsov, ...
Database 2015, bav067, 2015
1782015
Deep and wide digging for binding motifs in ChIP-Seq data
IV Kulakovskiy, VA Boeva, AV Favorov, VJ Makeev
Bioinformatics 26 (20), 2622-2623, 2010
1712010
Intergenic, gene terminal, and intragenic CpG islands in the human genome
Y Medvedeva, M Fridman, N Oparina, D Malko, E Ermakova, ...
BMC genomics 11 (1), 48, 2010
972010
Functional annotation of human long noncoding RNAs via molecular phenotyping
JA Ramilowski, CW Yip, S Agrawal, JC Chang, Y Ciani, IV Kulakovskiy, ...
Genome Research 30 (7), 1060-1072, 2020
792020
From binding motifs in ChIP-seq data to improved models of transcription factor binding sites
I KULAKOVSKIY, V LEVITSKY, D OSHCHEPKOV, L BRYZGALOV, ...
Journal of Bioinformatics and Computational Biology, 2013
732013
Jaccard index based similarity measure to compare transcription factor binding site models
IE Vorontsov, IV Kulakovskiy, VJ Makeev
Algorithms for Molecular Biology 8 (1), 23, 2013
672013
Architectural proteins Pita, Zw5, and ZIPIC contain homodimerization domain and support specific long-range interactions in Drosophila
N Zolotarev, A Fedotova, O Kyrchanova, A Bonchuk, AA Penin, AS Lando, ...
Nucleic acids research 44 (15), 7228-7241, 2016
572016
Single-Cell Analyses of ESCs Reveal Alternative Pluripotent Cell States and Molecular Mechanisms that Control Self-Renewal
D Papatsenko, H Darr, IV Kulakovskiy, A Waghray, VJ Makeev, ...
Stem Cell Reports 5 (2), 207-220, 2015
492015
GTRD: an integrated view of transcription regulation
S Kolmykov, I Yevshin, M Kulyashov, R Sharipov, Y Kondrakhin, ...
Nucleic Acids Research 49 (D1), D104-D111, 2021
482021
Application of experimentally verified transcription factor binding sites models for computational analysis of ChIP-Seq data
VG Levitsky, IV Kulakovskiy, NI Ershov, DY Oshchepkov, VJ Makeev, ...
BMC genomics 15 (1), 80, 2014
462014
Discovery of DNA motifs recognized by transcription factors through integration of different experimental sources
IV Kulakovskiy, VJ Makeev
Biophysics 54 (6), 667-674, 2009
402009
Motif discovery and motif finding from genome-mapped DNase footprint data
IV Kulakovskiy, AV Favorov, VJ Makeev
Bioinformatics 25 (18), 2318-2325, 2009
382009
Multifaceted deregulation of gene expression and protein synthesis with age
AS Anisimova, MB Meerson, MV Gerashchenko, IV Kulakovskiy, ...
PNAS 117 (27), 15581-15590, 2020
322020
PERFECTOS-APE-predicting regulatory functional effect of SNPs by approximate P-value estimation
IE Vorontsov, IV Kulakovskiy, G Khimulya, DD Nikolaeva, VJ Makeev
International Conference on Bioinformatics Models, Methods and Algorithms 2 …, 2015
322015
High‐quality genome assembly of Capsella bursa‐pastoris reveals asymmetry of regulatory elements at early stages of polyploid genome evolution
AS Kasianov, AV Klepikova, IV Kulakovskiy, ES Gerasimov, AV Fedotova, ...
The Plant Journal 91 (2), 278-291, 2017
312017
В данный момент система не может выполнить эту операцию. Повторите попытку позднее.
Статьи 1–20