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Petr m ponomarenko
Petr m ponomarenko
CHLA, USC, IC&G SB RAS, ALAPY
Verified email at chla.usc.edu - Homepage
Title
Cited by
Cited by
Year
An experimental verification of the predicted effects of promoter TATA-box polymorphisms associated with human diseases on interactions between the TATA boxes and TATA-binding …
L Savinkova, I Drachkova, T Arshinova, P Ponomarenko, M Ponomarenko, ...
PloS one 8 (2), e54626, 2013
702013
TATA box polymorphisms in human gene promoters and associated hereditary pathologies
LK Savinkova, MP Ponomarenko, PM Ponomarenko, IA Drachkova, ...
Biochemistry (Moscow) 74 (2), 117-129, 2009
692009
A step-by-step model of TBP/TATA box binding allows predicting human hereditary diseases by single nucleotide polymorphism
PM Ponomarenko, LK Savinkova, IA Drachkova, MV Lysova, ...
Doklady Biochemistry and Biophysics 419 (1), 88-92, 2008
482008
How to use SNP_TATA_Comparator to find a significant change in gene expression caused by the regulatory SNP of this gene’s promoter via a change in affinity of the TATA-binding …
M Ponomarenko, D Rasskazov, O Arkova, P Ponomarenko, V Suslov, ...
BioMed Research International 2015, 2015
352015
Obesity-related known and candidate SNP markers can significantly change affinity of TATA-binding protein for human gene promoters
OV Arkova, MP Ponomarenko, DA Rasskazov, IA Drachkova, ...
BMC genomics 16 (13), 1-13, 2015
312015
Evidence-based gene models for structural and functional annotations of the oil palm genome
KL Chan, TV Tatarinova, R Rosli, N Amiruddin, N Azizi, MAA Halim, ...
Biology direct 12 (1), 1-23, 2017
242017
Candidate SNP markers of reproductive potential are predicted by a significant change in the affinity of TATA-binding protein for human gene promoters
IV Chadaeva, PM Ponomarenko, DA Rasskazov, EB Sharypova, ...
BMC genomics 19 (3), 15-37, 2018
232018
Toward high-resolution population genomics using archaeological samples
I Morozova, P Flegontov, AS Mikheyev, S Bruskin, H Asgharian, ...
DNA research 23 (4), 295-310, 2016
232016
Thermodynamic and kinetic basis for recognition and repair of 8-oxoguanine in DNA by human 8-oxoguanine-DNA glycosylase
OO Kirpota, AV Endutkin, MP Ponomarenko, PM Ponomarenko, ...
Nucleic acids research 39 (11), 4836-4850, 2011
232011
SNPs in the HIV-1 TATA box and the AIDS pandemic
VV Suslov, PM Ponomarenko, VM Efimov, LK Savinkova, ...
Journal of Bioinformatics and Computational Biology 8 (03), 607-625, 2010
232010
Candidate SNP markers of aggressiveness-related complications and comorbidities of genetic diseases are predicted by a significant change in the affinity of TATA-binding …
IV Chadaeva, MP Ponomarenko, DA Rasskazov, EB Sharypova, ...
BMC genomics 17 (14), 225-239, 2016
222016
Candidate SNP markers of familial and sporadic Alzheimer's diseases are predicted by a significant change in the affinity of TATA-binding protein for human gene promoters
P Ponomarenko, I Chadaeva, DA Rasskazov, E Sharypova, EV Kashina, ...
Frontiers in aging neuroscience 9, 231, 2017
212017
Candidate SNP markers of gender-biased autoimmune complications of monogenic diseases are predicted by a significant change in the affinity of TATA-binding protein for human …
MP Ponomarenko, O Arkova, D Rasskazov, P Ponomarenko, L Savinkova, ...
Frontiers in immunology 7, 130, 2016
212016
Candidate SNP markers of chronopathologies are predicted by a significant change in the affinity of TATA-binding protein for human gene promoters
P Ponomarenko, D Rasskazov, V Suslov, E Sharypova, L Savinkova, ...
BioMed Research International 2016, 2016
202016
Sequence-based prediction of transcription upregulation by auxin in plants
PM Ponomarenko, MP Ponomarenko
Journal of Bioinformatics and Computational Biology 13 (01), 1540009, 2015
192015
Considering the kinetics of mRNA synthesis in the analysis of the genome and epigenome reveals determinants of co-transcriptional splicing
JC Davis-Turak, K Allison, MN Shokhirev, P Ponomarenko, LS Tsimring, ...
Nucleic acids research 43 (2), 699-707, 2015
182015
Prediction of the affinity of the TATA-binding protein to TATA boxes with single nucleotide polymorphisms
PM Ponomarenko, MP Ponomarenko, IA Drachkova, MV Lysova, ...
Molecular Biology 43 (3), 472-479, 2009
172009
TATA box polymorphisms in genes of commercial and laboratory animals and plants associated with selectively valuable traits
VV Suslov, PM Ponomarenko, MP Ponomarenko, IA Drachkova, ...
Russian Journal of Genetics 46 (4), 394-403, 2010
162010
A precise equilibrium equation for four steps of binding between TBP and TATA-box allows for the prediction of phenotypical expression upon mutation
PM Ponomarenko, VV Suslov, LK Savinkova, MP Ponomarenko, ...
Biofizika 55 (3), 400-414, 2010
142010
Natural selection equally supports the human tendencies in subordination and domination: a genome-wide study with in silico confirmation and in vivo validation in mice
I Chadaeva, P Ponomarenko, D Rasskazov, E Sharypova, E Kashina, ...
Frontiers in genetics 10, 73, 2019
132019
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