| metaSPAdes: a new versatile metagenomic assembler S Nurk, D Meleshko, A Korobeynikov, PA Pevzner Genome research 27 (5), 824-834, 2017 | 3297 | 2017 |
| Using SPAdes de novo assembler A Prjibelski, D Antipov, D Meleshko, A Lapidus, A Korobeynikov Current protocols in bioinformatics 70 (1), e102, 2020 | 1560 | 2020 |
| American gut: an open platform for citizen science microbiome research D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ... Msystems 3 (3), 10.1128/msystems. 00031-18, 2018 | 695 | 2018 |
| Petabase-scale sequence alignment catalyses viral discovery RC Edgar, B Taylor, V Lin, T Altman, P Barbera, D Meleshko, D Lohr, ... Nature 602 (7895), 142-147, 2022 | 333 | 2022 |
| A global metagenomic map of urban microbiomes and antimicrobial resistance D Danko, D Bezdan, EE Afshin, S Ahsanuddin, C Bhattacharya, DJ Butler, ... Cell 184 (13), 3376-3393. e17, 2021 | 236 | 2021 |
| Critical assessment of metagenome interpretation: the second round of challenges F Meyer, A Fritz, ZL Deng, D Koslicki, TR Lesker, A Gurevich, G Robertson, ... Nature methods 19 (4), 429-440, 2022 | 226 | 2022 |
| Cartography of opportunistic pathogens and antibiotic resistance genes in a tertiary hospital environment KR Chng, C Li, D Bertrand, AHQ Ng, JS Kwah, HM Low, C Tong, ... Nature medicine 26 (6), 941-951, 2020 | 184 | 2020 |
| Shotgun transcriptome, spatial omics, and isothermal profiling of SARS-CoV-2 infection reveals unique host responses, viral diversification, and drug interactions D Butler, C Mozsary, C Meydan, J Foox, J Rosiene, A Shaiber, D Danko, ... Nature communications 12 (1), 1660, 2021 | 147 | 2021 |
| Shotgun transcriptome and isothermal profiling of SARS-CoV-2 infection reveals unique host responses, viral diversification, and drug interactions DJ Butler, C Mozsary, C Meydan, D Danko, J Foox, J Rosiene, A Shaiber, ... BioRxiv, 2020 | 84 | 2020 |
| A deep learning approach to diagnostic classification of prostate cancer using pathology–radiology fusion P Khosravi, M Lysandrou, M Eljalby, Q Li, E Kazemi, P Zisimopoulos, ... Journal of Magnetic Resonance Imaging 54 (2), 462-471, 2021 | 76 | 2021 |
| BiosyntheticSPAdes: reconstructing biosynthetic gene clusters from assembly graphs D Meleshko, H Mohimani, V Tracanna, I Hajirasouliha, MH Medema, ... Genome research 29 (8), 1352-1362, 2019 | 62 | 2019 |
| coronaSPAdes: from biosynthetic gene clusters to RNA viral assemblies D Meleshko, I Hajirasouliha, A Korobeynikov Bioinformatics 38 (1), 1-8, 2022 | 54 | 2022 |
| Minerva: an alignment-and reference-free approach to deconvolve linked-reads for metagenomics DC Danko, D Meleshko, D Bezdan, C Mason, I Hajirasouliha Genome research 29 (1), 116-124, 2019 | 34 | 2019 |
| Global genetic cartography of urban metagenomes and anti-microbial resistance D Danko, D Bezdan, E Afshinnekoo, S Ahsanuddin, C Bhattacharya, ... BioRxiv, 724526, 2019 | 33 | 2019 |
| Knight R. 2018 D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ... American Gut: an open platform for citizen science microbiome research …, 2018 | 29 | 2018 |
| Host, viral, and environmental transcriptome profiles of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) DJ Butler, C Mozsary, C Meydan, D Danko, J Foox, J Rosiene, A Shaiber, ... bioRxiv, 2020.04. 20.048066, 2020 | 24 | 2020 |
| Cue: a deep-learning framework for structural variant discovery and genotyping V Popic, C Rohlicek, F Cunial, I Hajirasouliha, D Meleshko, K Garimella, ... Nature methods 20 (4), 559-568, 2023 | 21 | 2023 |
| A comprehensive metagenomics framework to characterize organisms relevant for planetary protection DC Danko, MA Sierra, JN Benardini, L Guan, JM Wood, N Singh, ... Microbiome 9, 1-15, 2021 | 18 | 2021 |
| Detection and assembly of novel sequence insertions using Linked-Read technology D Meleshko, P Marks, S Williams, I Hajirasouliha BioRxiv, 551028, 2019 | 14 | 2019 |
| Knight R. 2018. American Gut: an open platform for citizen science microbiome research. mSystems 3: e00031-18 D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ... | 12 | 2018 |
Anton KorobeynikovVerified email at korobeynikov.info
