Dmitry Meleshko
Dmitry Meleshko
Weill Cornell Medicine
Verified email at med.cornell.edu
Title
Cited by
Cited by
Year
metaSPAdes: a new versatile metagenomic assembler
S Nurk, D Meleshko, A Korobeynikov, PA Pevzner
Genome research 27 (5), 824-834, 2017
12442017
American Gut: an open platform for citizen science microbiome research
D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ...
Msystems 3 (3), e00031-18, 2018
2822018
Shotgun transcriptome and isothermal profiling of SARS-CoV-2 infection reveals unique host responses, viral diversification, and drug interactions
DJ Butler, C Mozsary, C Meydan, D Danko, J Foox, J Rosiene, A Shaiber, ...
BioRxiv, 2020
662020
Using SPAdes de novo assembler
A Prjibelski, D Antipov, D Meleshko, A Lapidus, A Korobeynikov
Current protocols in bioinformatics 70 (1), e102, 2020
582020
metaSPAdes: a new versatile de novo metagenomics assembler
S Nurk, D Meleshko, A Korobeynikov, P Pevzner
arXiv preprint arXiv:1604.03071, 2016
382016
Cartography of opportunistic pathogens and antibiotic resistance genes in a tertiary hospital environment
KR Chng, C Li, D Bertrand, AHQ Ng, JS Kwah, HM Low, C Tong, ...
Nature medicine 26 (6), 941-951, 2020
352020
American Gut: an open platform for citizen science microbiome research. mSystems 3: e00031-18
D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ...
302018
BiosyntheticSPAdes: reconstructing biosynthetic gene clusters from assembly graphs
D Meleshko, H Mohimani, V Tracanna, I Hajirasouliha, MH Medema, ...
Genome research 29 (8), 1352-1362, 2019
252019
Minerva: an alignment-and reference-free approach to deconvolve Linked-Reads for metagenomics
DC Danko, D Meleshko, D Bezdan, C Mason, I Hajirasouliha
Genome research 29 (1), 116-124, 2019
232019
Shotgun transcriptome, spatial omics, and isothermal profiling of SARS-CoV-2 infection reveals unique host responses, viral diversification, and drug interactions
D Butler, C Mozsary, C Meydan, J Foox, J Rosiene, A Shaiber, D Danko, ...
Nature communications 12 (1), 1-17, 2021
222021
Global genetic cartography of urban metagenomes and anti-microbial resistance
D Danko, D Bezdan, E Afshinnekoo, S Ahsanuddin, C Bhattacharya, ...
BioRxiv, 724526, 2019
202019
Petabase-scale sequence alignment catalyses viral discovery
RC Edgar, J Taylor, V Lin, T Altman, P Barbera, D Meleshko, D Lohr, ...
bioRxiv, 2020.08. 07.241729, 2021
132021
Host, viral, and environmental transcriptome profiles of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
DJ Butler, C Mozsary, C Meydan, D Danko, J Foox, J Rosiene, A Shaiber, ...
bioRxiv, 2020
132020
Detection and assembly of novel sequence insertions using linked-read technology
D Meleshko, P Marks, S Williams, I Hajirasouliha
BioRxiv, 551028, 2019
82019
A global metagenomic map of urban microbiomes and antimicrobial resistance
D Danko, D Bezdan, EE Afshin, S Ahsanuddin, C Bhattacharya, DJ Butler, ...
Cell, 2021
62021
Knight R. 2018. American Gut: an open platform for citizen science microbiome research. mSystems 3: e00031-18
D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ...
52018
Knight R. 2018
D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ...
American gut: an open platform for citizen science. mSystems 3, 00031-18, 0
5
coronaSPAdes: from biosynthetic gene clusters to RNA viral assemblies
D Meleshko, I Hajirasouliha, A Korobeynikov
bioRxiv, 2020.07. 28.224584, 2021
32021
Biopsy-free prediction of prostate cancer aggressiveness using deep learning and radiology imaging
P Khosravi, M Lysandrou, M Eljalby, M Brendel, Q Li, E Kazemi, J Barnes, ...
medRxiv, 2019
22019
A comprehensive metagenomics framework to characterize organisms relevant for planetary protection
DC Danko, MA Sierra, JN Benardini, L Guan, JM Wood, N Singh, ...
Microbiome 9 (1), 1-15, 2021
12021
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Articles 1–20