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Dmitry Meleshko
Dmitry Meleshko
Weill Cornell Medicine
Подтвержден адрес электронной почты в домене med.cornell.edu
Название
Процитировано
Процитировано
Год
metaSPAdes: a new versatile metagenomic assembler
S Nurk, D Meleshko, A Korobeynikov, PA Pevzner
Genome research 27 (5), 824-834, 2017
29082017
Using SPAdes de novo assembler
A Prjibelski, D Antipov, D Meleshko, A Lapidus, A Korobeynikov
Current protocols in bioinformatics 70 (1), e102, 2020
12042020
American gut: an open platform for citizen science microbiome research
D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ...
Msystems 3 (3), 10.1128/msystems. 00031-18, 2018
6472018
Petabase-scale sequence alignment catalyses viral discovery
RC Edgar, B Taylor, V Lin, T Altman, P Barbera, D Meleshko, D Lohr, ...
Nature 602 (7895), 142-147, 2022
2692022
A global metagenomic map of urban microbiomes and antimicrobial resistance
D Danko, D Bezdan, EE Afshin, S Ahsanuddin, C Bhattacharya, DJ Butler, ...
Cell 184 (13), 3376-3393. e17, 2021
2002021
Critical assessment of metagenome interpretation: the second round of challenges
F Meyer, A Fritz, ZL Deng, D Koslicki, TR Lesker, A Gurevich, G Robertson, ...
Nature methods 19 (4), 429-440, 2022
1822022
Cartography of opportunistic pathogens and antibiotic resistance genes in a tertiary hospital environment
KR Chng, C Li, D Bertrand, AHQ Ng, JS Kwah, HM Low, C Tong, ...
Nature medicine 26 (6), 941-951, 2020
1542020
Shotgun transcriptome, spatial omics, and isothermal profiling of SARS-CoV-2 infection reveals unique host responses, viral diversification, and drug interactions
D Butler, C Mozsary, C Meydan, J Foox, J Rosiene, A Shaiber, D Danko, ...
Nature communications 12 (1), 1660, 2021
1402021
Shotgun transcriptome and isothermal profiling of SARS-CoV-2 infection reveals unique host responses, viral diversification, and drug interactions
DJ Butler, C Mozsary, C Meydan, D Danko, J Foox, J Rosiene, A Shaiber, ...
BioRxiv, 2020
832020
A deep learning approach to diagnostic classification of prostate cancer using pathology–radiology fusion
P Khosravi, M Lysandrou, M Eljalby, Q Li, E Kazemi, P Zisimopoulos, ...
Journal of Magnetic Resonance Imaging 54 (2), 462-471, 2021
572021
BiosyntheticSPAdes: reconstructing biosynthetic gene clusters from assembly graphs
D Meleshko, H Mohimani, V Tracanna, I Hajirasouliha, MH Medema, ...
Genome research 29 (8), 1352-1362, 2019
562019
metaSPAdes: a new versatile de novo metagenomics assembler
S Nurk, D Meleshko, A Korobeynikov, P Pevzner
arXiv preprint arXiv:1604.03071, 2016
482016
coronaSPAdes: from biosynthetic gene clusters to RNA viral assemblies
D Meleshko, I Hajirasouliha, A Korobeynikov
Bioinformatics 38 (1), 1-8, 2022
442022
Global genetic cartography of urban metagenomes and anti-microbial resistance
D Danko, D Bezdan, E Afshinnekoo, S Ahsanuddin, C Bhattacharya, ...
BioRxiv, 724526, 2019
332019
Minerva: an alignment-and reference-free approach to deconvolve linked-reads for metagenomics
DC Danko, D Meleshko, D Bezdan, C Mason, I Hajirasouliha
Genome research 29 (1), 116-124, 2019
332019
Knight R. 2018
D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ...
American Gut: an open platform for citizen science microbiome research …, 2018
272018
Host, viral, and environmental transcriptome profiles of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
DJ Butler, C Mozsary, C Meydan, D Danko, J Foox, J Rosiene, A Shaiber, ...
bioRxiv, 2020.04. 20.048066, 2020
242020
A comprehensive metagenomics framework to characterize organisms relevant for planetary protection
DC Danko, MA Sierra, JN Benardini, L Guan, JM Wood, N Singh, ...
Microbiome 9, 1-15, 2021
172021
Detection and assembly of novel sequence insertions using Linked-Read technology
D Meleshko, P Marks, S Williams, I Hajirasouliha
BioRxiv, 551028, 2019
142019
Cue: a deep-learning framework for structural variant discovery and genotyping
V Popic, C Rohlicek, F Cunial, I Hajirasouliha, D Meleshko, K Garimella, ...
Nature methods 20 (4), 559-568, 2023
132023
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Статьи 1–20