| Microbiome definition re-visited: old concepts and new challenges G Berg, D Rybakova, D Fischer, T Cernava, MCC Vergès, T Charles, ... Microbiome 8 (1), 1-22, 2020 | 1522 | 2020 |
| Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome E Pasolli, F De Filippis, IE Mauriello, F Cumbo, AM Walsh, J Leech, ... Nature communications 11 (1), 1-12, 2020 | 225 | 2020 |
| Microbial succession and flavor production in the fermented dairy beverage kefir AM Walsh, F Crispie, K Kilcawley, O O’Sullivan, MG O’Sullivan, ... Msystems 1 (5), e00052-16, 2016 | 200 | 2016 |
| Translating omics to food microbiology AM Walsh, F Crispie, MJ Claesson, PD Cotter Annual review of food science and technology 8, 113-134, 2017 | 93 | 2017 |
| Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants J Leech, R Cabrera-Rubio, AM Walsh, G Macori, CJ Walsh, W Barton, ... Msystems 5 (6), 2020 | 85 | 2020 |
| Strain-level metagenomic analysis of the fermented dairy beverage nunu highlights potential food safety risks AM Walsh, F Crispie, K Daari, O O'Sullivan, JC Martin, CT Arthur, ... Appl. Environ. Microbiol. 83 (16), e01144-17, 2017 | 81 | 2017 |
| Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality AM Walsh, G Macori, KN Kilcawley, PD Cotter Nature Food 1 (8), 500-510, 2020 | 78 | 2020 |
| Distinct actions of the fermented beverage kefir on host behaviour, immunity and microbiome gut-brain modules in the mouse M van de Wouw, AM Walsh, F Crispie, L van Leuven, JM Lyte, M Boehme, ... Microbiome 8, 1-20, 2020 | 68 | 2020 |
| Species classifier choice is a key consideration when analysing low-complexity food microbiome data AM Walsh, F Crispie, O O’Sullivan, L Finnegan, MJ Claesson, PD Cotter Microbiome 6 (1), 50, 2018 | 68 | 2018 |
| Omics-based insights into flavor development and microbial succession within surface-ripened cheese AS Bertuzzi, AM Walsh, JJ Sheehan, PD Cotter, F Crispie, ... MSystems 3 (1), e00211-17, 2018 | 60 | 2018 |
| A framework for microbiome science in public health JE Wilkinson, EA Franzosa, C Everett, C Li, FB Hu, DF Wirth, M Song, ... Nature Medicine, 1-9, 2021 | 50 | 2021 |
| A pilot study demonstrating the altered gut microbiota functionality in stable adults with Cystic Fibrosis F Fouhy, NJ Ronan, O O’Sullivan, Y McCarthy, AM Walsh, DM Murphy, ... Scientific reports 7 (1), 1-12, 2017 | 41 | 2017 |
| The effect of ovine milk fermentation on the antithrombotic properties of polar lipids R Lordan, AM Walsh, F Crispie, L Finnegan, PD Cotter, I Zabetakis Journal of functional foods 54, 289-300, 2019 | 29 | 2019 |
| Kefir Ameliorates Specific Microbiota-Gut-Brain Axis Impairments in a Mouse Model Relevant to Autism Spectrum Disorder M van de Wouw, CJ Walsh, GMD Vigano, JM Lyte, M Boehme, ... Brain, Behavior, and Immunity, 2021 | 19 | 2021 |
| Caprine milk fermentation enhances the antithrombotic properties of cheese polar lipids R Lordan, A Walsh, F Crispie, L Finnegan, M Demuru, A Tsoupras, ... Journal of Functional Foods 61, 103507, 2019 | 18 | 2019 |
| The Lung Microbiome in Young Children with Cystic Fibrosis: A Prospective Cohort Study B Linnane, AM Walsh, CJ Walsh, F Crispie, O O’Sullivan, PD Cotter, ... Microorganisms 9 (3), 492, 2021 | 17 | 2021 |
| Bioinformatic approaches for studying the microbiome of fermented food LH Walsh, M Coakley, AM Walsh, PW O’Toole, PD Cotter Critical Reviews in Microbiology, 1-33, 2022 | 13 | 2022 |
| Protein quality and quantity influence the effect of dietary fat on weight gain and tissue partitioning via host-microbiota changes O Nychyk, W Barton, AM Rudolf, S Boscaini, A Walsh, TFS Bastiaanssen, ... Cell Reports 35 (6), 109093, 2021 | 10 | 2021 |
| Integrated molecular approaches for fermented food microbiome research AM Walsh, J Leech, C Huttenhower, H Delhomme-Nguyen, F Crispie, ... FEMS Microbiology Reviews, fuad001, 2023 | 9 | 2023 |
| Proficiency testing of metagenomics-based detection of food-borne pathogens using a complex artificial sequencing dataset D Höper, J Grützke, A Brinkmann, J Mossong, SPF Matamoros, RJ Ellis, ... Frontiers in Microbiology 11, 2769, 2020 | 9 | 2020 |
