| A physical and functional map of the human TNF-α/NF-κB signal transduction pathway T Bouwmeester, A Bauch, H Ruffner, PO Angrand, G Bergamini, ... Nature cell biology 6 (2), 97-105, 2004 | 1256 | 2004 |
| Severe COVID-19 is marked by a dysregulated myeloid cell compartment J Schulte-Schrepping, N Reusch, D Paclik, K Baßler, S Schlickeiser, ... Cell 182 (6), 1419-1440. e23, 2020 | 1022 | 2020 |
| Bidirectional promoters generate pervasive transcription in yeast Z Xu, W Wei, J Gagneur, F Perocchi, S Clauder-Münster, J Camblong, ... Nature 457 (7232), 1033-1037, 2009 | 1017 | 2009 |
| Deep learning: new computational modelling techniques for genomics G Eraslan, Ž Avsec, J Gagneur, FJ Theis Nature Reviews Genetics 20 (7), 389-403, 2019 | 763 | 2019 |
| The genomic and transcriptomic landscape of a HeLa cell line JJM Landry, PT Pyl, T Rausch, T Zichner, MM Tekkedil, AM Stütz, A Jauch, ... G3: Genes, Genomes, Genetics 3 (8), 1213-1224, 2013 | 552 | 2013 |
| A deep proteome and transcriptome abundance atlas of 29 healthy human tissues D Wang, B Eraslan, T Wieland, B Hallström, T Hopf, DP Zolg, J Zecha, ... Molecular systems biology 15 (2), e8503, 2019 | 464 | 2019 |
| Genetic diagnosis of Mendelian disorders via RNA sequencing LS Kremer, DM Bader, C Mertes, R Kopajtich, G Pichler, A Iuso, TB Haack, ... Nature communications 8 (1), 15824, 2017 | 461 | 2017 |
| Combinatorial binding predicts spatio-temporal cis-regulatory activity RP Zinzen, C Girardot, J Gagneur, M Braun, EEM Furlong Nature 462 (7269), 65-70, 2009 | 453 | 2009 |
| TT-seq maps the human transient transcriptome B Schwalb, M Michel, B Zacher, K Frühauf, C Demel, A Tresch, J Gagneur, ... Science 352 (6290), 1225-1228, 2016 | 393 | 2016 |
| Computation of elementary modes: a unifying framework and the new binary approach J Gagneur, S Klamt BMC bioinformatics 5 (1), 1-21, 2004 | 341 | 2004 |
| Transcriptome surveillance by selective termination of noncoding RNA synthesis D Schulz, B Schwalb, A Kiesel, C Baejen, P Torkler, J Gagneur, J Soeding, ... Cell 155 (5), 1075-1087, 2013 | 245 | 2013 |
| Base-resolution models of transcription-factor binding reveal soft motif syntax Ž Avsec, M Weilert, A Shrikumar, S Krueger, A Alexandari, K Dalal, ... Nature Genetics 53 (3), 354-366, 2021 | 244 | 2021 |
| Longitudinal multi-omics analyses identify responses of megakaryocytes, erythroid cells, and plasmablasts as hallmarks of severe COVID-19 JP Bernardes, N Mishra, F Tran, T Bahmer, L Best, JI Blase, D Bordoni, ... Immunity 53 (6), 1296-1314. e9, 2020 | 241 | 2020 |
| Dynamic regulation by polycomb group protein complexes controls pattern formation and the cell cycle in Drosophila K Oktaba, L Gutiérrez, J Gagneur, C Girardot, AK Sengupta, EEM Furlong, ... Developmental cell 15 (6), 877-889, 2008 | 230 | 2008 |
| Antisense expression increases gene expression variability and locus interdependency Z Xu, W Wei, J Gagneur, S Clauder‐Münster, M Smolik, W Huber, ... Molecular systems biology 7 (1), 468, 2011 | 201 | 2011 |
| GOing Bayesian: model-based gene set analysis of genome-scale data S Bauer, J Gagneur, PN Robinson Nucleic acids research 38 (11), 3523-3532, 2010 | 185 | 2010 |
| Modular decomposition of protein-protein interaction networks J Gagneur, R Krause, T Bouwmeester, G Casari Genome biology 5, 1-12, 2004 | 175 | 2004 |
| Dissecting the genetic basis of resistance to malaria parasites in Anopheles gambiae SA Blandin, R Wang-Sattler, M Lamacchia, J Gagneur, G Lycett, Y Ning, ... Science 326 (5949), 147-150, 2009 | 130 | 2009 |
| MMSplice: modular modeling improves the predictions of genetic variant effects on splicing J Cheng, TYD Nguyen, KJ Cygan, MH Çelik, WG Fairbrother, J Gagneur Genome biology 20 (1), 1-15, 2019 | 114 | 2019 |
| Biallelic mutations in NBAS cause recurrent acute liver failure with onset in infancy TB Haack, C Staufner, MG Köpke, BK Straub, S Kölker, C Thiel, ... The American Journal of Human Genetics 97 (1), 163-169, 2015 | 114 | 2015 |
