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Fabio Luciani
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VDJdb: a curated database of T-cell receptor sequences with known antigen specificity
M Shugay, DV Bagaev, IV Zvyagin, RM Vroomans, JC Crawford, G Dolton, ...
Nucleic acids research 46 (D1), D419-D427, 2018
4882018
VDJdb in 2019: database extension, new analysis infrastructure and a T-cell receptor motif compendium
DV Bagaev, RMA Vroomans, J Samir, U Stervbo, C Rius, G Dolton, ...
Nucleic acids research 48 (D1), D1057-D1062, 2020
3582020
Sequential bottlenecks drive viral evolution in early acute hepatitis C virus infection
RA Bull, F Luciani, K McElroy, S Gaudieri, ST Pham, A Chopra, ...
PLoS pathogens 7 (9), e1002243, 2011
3032011
High-throughput targeted long-read single cell sequencing reveals the clonal and transcriptional landscape of lymphocytes
M Singh, G Al-Eryani, S Carswell, JM Ferguson, J Blackburn, K Barton, ...
Nature communications 10 (1), 3120, 2019
2922019
Effects and interactions in an environmentally relevant mixture of pharmaceuticals
F Pomati, C Orlandi, M Clerici, F Luciani, E Zuccato
Toxicological sciences 102 (1), 129-137, 2008
2822008
Analytical validity of nanopore sequencing for rapid SARS-CoV-2 genome analysis
RA Bull, TN Adikari, JM Ferguson, JM Hammond, I Stevanovski, ...
Nature communications 11 (1), 6272, 2020
2642020
Human CD8+ T cell cross-reactivity across influenza A, B and C viruses
M Koutsakos, PT Illing, THO Nguyen, NA Mifsud, JC Crawford, S Rizzetto, ...
Nature immunology 20 (5), 613-625, 2019
2172019
A liver capsular network of monocyte-derived macrophages restricts hepatic dissemination of intraperitoneal bacteria by neutrophil recruitment
F Sierro, M Evrard, S Rizzetto, M Melino, AJ Mitchell, M Florido, L Beattie, ...
Immunity 47 (2), 374-388. e6, 2017
2132017
GemSIM: general, error-model based simulator of next-generation sequencing data
KE McElroy, F Luciani, T Thomas
BMC genomics 13, 1-9, 2012
2022012
The epidemiological fitness cost of drug resistance in Mycobacterium tuberculosis
F Luciani, SA Sisson, H Jiang, AR Francis, MM Tanaka
Proceedings of the National Academy of Sciences 106 (34), 14711-14715, 2009
2012009
Using approximate Bayesian computation to estimate tuberculosis transmission parameters from genotype data
MM Tanaka, AR Francis, F Luciani, SA Sisson
Genetics 173 (3), 1511-1520, 2006
1922006
Atypical B cells are part of an alternative lineage of B cells that participates in responses to vaccination and infection in humans
HJ Sutton, R Aye, AH Idris, R Vistein, E Nduati, O Kai, J Mwacharo, X Li, ...
Cell reports 34 (6), 2021
1712021
Investigation of product-derived lymphoma following infusion of piggyBac-modified CD19 chimeric antigen receptor T cells
KP Micklethwaite, K Gowrishankar, BS Gloss, Z Li, JA Street, L Moezzi, ...
Blood, The Journal of the American Society of Hematology 138 (16), 1391-1405, 2021
1612021
SARS-CoV-2 and COVID-19: A genetic, epidemiological, and evolutionary perspective
M Sironi, SE Hasnain, B Rosenthal, T Phan, F Luciani, MA Shaw, ...
Infection, genetics and evolution 84, 104384, 2020
1612020
Inhibitors of the hepatitis C virus polymerase; mode of action and resistance
AA Eltahla, F Luciani, PA White, AR Lloyd, RA Bull
Viruses 7 (10), 5206-5224, 2015
1482015
Contribution of intra-and interhost dynamics to norovirus evolution
RA Bull, JS Eden, F Luciani, K McElroy, WD Rawlinson, PA White
Journal of virology 86 (6), 3219-3229, 2012
1482012
Linking the T cell receptor to the single cell transcriptome in antigen‐specific human T cells
AA Eltahla, S Rizzetto, MR Pirozyan, BD Betz‐Stablein, V Venturi, ...
Immunology and cell biology 94 (6), 604-611, 2016
1262016
Clonally diverse CD38+ HLA-DR+ CD8+ T cells persist during fatal H7N9 disease
Z Wang, L Zhu, THO Nguyen, Y Wan, S Sant, SM Quiñones-Parra, ...
Nature communications 9 (1), 1-12, 2018
1252018
Viral quasispecies assembly via maximal clique enumeration
A Töpfer, T Marschall, RA Bull, F Luciani, A Schönhuth, N Beerenwinkel
PLoS computational biology 10 (3), e1003515, 2014
1252014
Lymphoma driver mutations in the pathogenic evolution of an iconic human autoantibody
M Singh, KJL Jackson, JJ Wang, P Schofield, MA Field, D Koppstein, ...
Cell 180 (5), 878-894. e19, 2020
1182020
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