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Olga Kalinina
Olga Kalinina
Helmholtz Institute for Pharmaceutical Research Saarland
Verified email at helmholtz-hzi.de - Homepage
Title
Cited by
Cited by
Year
Impact of genome reduction on bacterial metabolism and its regulation
E Yus, T Maier, K Michalodimitrakis, V van Noort, T Yamada, WH Chen, ...
science 326 (5957), 1263-1268, 2009
3882009
Automated selection of positions determining functional specificity of proteins by comparative analysis of orthologous groups in protein families
OV Kalinina, AA Mironov, MS Gelfand, AB Rakhmaninova
Protein Science 13 (2), 443-456, 2004
1572004
Artificial intelligence for natural product drug discovery
MW Mullowney, KR Duncan, SS Elsayed, N Garg, JJJ van der Hooft, ...
Nature Reviews Drug Discovery 22 (11), 895-916, 2023
1472023
SDPpred: a tool for prediction of amino acid residues that determine differences in functional specificity of homologous proteins
OV Kalinina, PS Novichkov, AA Mironov, MS Gelfand, AB Rakhmaninova
Nucleic acids research 32 (suppl 2), W424-W428, 2004
1062004
Comparative genomics of regulation of heavy metal resistance in Eubacteria
EA Permina, AE Kazakov, OV Kalinina, MS Gelfand
BMC microbiology 6, 1-11, 2006
1032006
Systematic discovery of linear binding motifs targeting an ancient protein interaction surface on MAP kinases
A Zeke, T Bastys, A Alexa, Á Garai, B Mészáros, K Kirsch, Z Dosztányi, ...
Molecular systems biology 11 (11), 837, 2015
752015
An automated stochastic approach to the identification of the protein specificity determinants and functional subfamilies
PV Mazin, MS Gelfand, AA Mironov, AB Rakhmaninova, AR Rubinov, ...
Algorithms for Molecular Biology 5, 1-12, 2010
722010
Combining specificity determining and conserved residues improves functional site prediction
OV Kalinina, MS Gelfand, RB Russell
BMC bioinformatics 10, 1-24, 2009
522009
DIGGER: exploring the functional role of alternative splicing in protein interactions
Z Louadi, K Yuan, A Gress, O Tsoy, OV Kalinina, J Baumbach, ...
Nucleic Acids Research, 2020
472020
StructMAn: annotation of single-nucleotide polymorphisms in the structural context
A Gress, V Ramensky, J Büch, A Keller, OV Kalinina
Nucleic acids research 44 (W1), W463-W468, 2016
452016
Targeting actin inhibits repair of doxorubicin-induced DNA damage: a novel therapeutic approach for combination therapy
L Pfitzer, C Moser, F Gegenfurtner, A Arner, F Foerster, C Atzberger, ...
Cell death & disease 10 (4), 302, 2019
412019
Enthalpy–Entropy Compensation upon Molecular Conformational Changes
M Ahmad, V Helms, T Lengauer, OV Kalinina
Journal of Chemical Theory and Computation 11 (4), 1410-1418, 2015
372015
Modelling binding between CCR5 and CXCR4 receptors and their ligands suggests the surface electrostatic potential of the co-receptor to be a key player in the HIV-1 tropism
OV Kalinina, N Pfeifer, T Lengauer
Retrovirology 10 (1), 130, 2013
372013
Combinations of protein-chemical complex structures reveal new targets for established drugs
OV Kalinina, O Wichmann, G Apic, RB Russell
PLOS computational biology 7 (5), e1002043, 2011
372011
Consistent prediction of mutation effect on drug binding in HIV-1 protease using alchemical calculations
T Bastys, V Gapsys, NT Doncheva, R Kaiser, BL de Groot, OV Kalinina
Journal of chemical theory and computation 14 (7), 3397-3408, 2018
292018
Adaptation of a Bacterial Multidrug Resistance System Revealed by the Structure and Function of AlbA
A Sikandar, K Cirnski, G Testolin, C Volz, M Brönstrup, OV Kalinina, ...
Journal of the American Chemical Society 140 (48), 16641-16649, 2018
232018
Spatial distribution of disease-associated variants in three-dimensional structures of protein complexes
A Gress, V Ramensky, OV Kalinina
Oncogenesis 6 (9), e380-e380, 2017
232017
Sequence and Structure Analysis of Distantly-Related Viruses Reveals Extensive Gene Transfer between Viruses and Hosts and among Viruses
S Caprari, S Metzler, T Lengauer, OV Kalinina
Viruses 7 (10), 5388-5409, 2015
232015
Non-active site mutants of HIV-1 protease influence resistance and sensitisation towards protease inhibitors
T Bastys, V Gapsys, H Walter, E Heger, NT Doncheva, R Kaiser, ...
Retrovirology 17 (1), 13, 2020
222020
Detection of atypical genes in virus families using a one-class SVM
S Metzler, OV Kalinina
BMC genomics 15, 1-12, 2014
222014
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Articles 1–20