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Daniel B Roche
Daniel B Roche
Tertiary Knowledge Manager, SOPHiA Genetics
Verified email at nespran.com - Homepage
Title
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Cited by
Year
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ...
Genome biology 20, 1-23, 2019
3682019
DisProt 7.0: a major update of the database of disordered proteins
D Piovesan, F Tabaro, I Mičetić, M Necci, F Quaglia, CJ Oldfield, ...
Nucleic acids research 45 (D1), D219-D227, 2017
3292017
The ModFOLD4 server for the quality assessment of 3D protein models
LJ McGuffin, MT Buenavista, DB Roche
Nucleic acids research 41 (W1), W368-W372, 2013
1352013
IntFOLD: an integrated server for modelling protein structures and functions from amino acid sequences
LJ McGuffin, JD Atkins, BR Salehe, AN Shuid, DB Roche
Nucleic acids research 43 (W1), W169-W173, 2015
1332015
The IntFOLD server: an integrated web resource for protein fold recognition, 3D model quality assessment, intrinsic disorder prediction, domain prediction and ligand binding …
DB Roche, MT Buenavista, SJ Tetchner, LJ McGuffin
Nucleic acids research 39 (suppl_2), W171-W176, 2011
1222011
Rapid model quality assessment for protein structure predictions using the comparison of multiple models without structural alignments
LJ McGuffin, DB Roche
Bioinformatics 26 (2), 182-188, 2010
1052010
Proteins and their interacting partners: An introduction to protein–ligand binding site prediction methods
DB Roche, DA Brackenridge, LJ McGuffin
International journal of molecular sciences 16 (12), 29829-29842, 2015
902015
FunFOLD: an improved automated method for the prediction of ligand binding residues using 3D models of proteins
DB Roche, SJ Tetchner, LJ McGuffin
BMC bioinformatics 12, 1-20, 2011
802011
Accurate template‐based modeling in CASP12 using the IntFOLD4‐TS, ModFOLD6, and ReFOLD methods
LJ McGuffin, AN Shuid, R Kempster, AHA Maghrabi, JO Nealon, ...
Proteins: Structure, Function, and Bioinformatics 86, 335-344, 2018
632018
Improvement of 3D protein models using multiple templates guided by single-template model quality assessment
MT Buenavista, DB Roche, LJ McGuffin
Bioinformatics 28 (14), 1851-1857, 2012
612012
Body mass index and complications following major gastrointestinal surgery: a prospective, international cohort study and meta‐analysis
EuroSurg Collaborative, R Blanco‐Colino, S Lee, SK Kamarajah, P Vasko, ...
Colorectal Disease 20 (8), O215-O225, 2018
562018
The FunFOLD2 server for the prediction of protein–ligand interactions
DB Roche, MT Buenavista, LJ McGuffin
Nucleic acids research 41 (W1), W303-W307, 2013
562013
Automated tertiary structure prediction with accurate local model quality assessment using the intfold‐ts method
LJ McGuffin, DB Roche
Proteins: Structure, Function, and Bioinformatics 79 (S10), 137-146, 2011
362011
TAPO: A combined method for the identification of tandem repeats in protein structures
P Do Viet, DB Roche, AV Kajava
FEBS Letters 589 (19), 2611-2619, 2015
292015
FunFOLDQA: a quality assessment tool for protein-ligand binding site residue predictions
DB Roche, MT Buenavista, LJ McGuffin
PLoS One 7 (5), e38219, 2012
292012
The binding site distance test score: a robust method for the assessment of predicted protein binding sites
DB Roche, SJ Tetchner, LJ McGuffin
Bioinformatics 26 (22), 2920-2921, 2010
282010
Assessing the Quality of Modelled 3D Protein Structures Using the ModFOLD Server
DB Roche, MT Buenavista, LJ McGuffin
Protein Structure Prediction, 83, 2014
262014
Functional analysis of Plasmodium falciparum subpopulations associated with artemisinin resistance in Cambodia
A Dwivedi, C Reynes, A Kuehn, DB Roche, N Khim, M Hebrard, ...
Malaria Journal 16, 1-17, 2017
212017
Classification of β-hairpin repeat proteins
DB Roche, P Do Viet, A Bakulina, L Hirsh, SCE Tosatto, AV Kajava
Journal of structural biology 201 (2), 130-138, 2018
202018
Evaluation of prognostic risk models for postoperative pulmonary complications in adult patients undergoing major abdominal surgery: a systematic review and international …
O Kouli, V Murray, S Bhatia, WA Cambridge, M Kawka, S Shafi, SR Knight, ...
The Lancet Digital Health 4 (7), e520-e531, 2022
172022
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