Alvis Brazma
Title
Cited by
Cited by
Year
An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57-74, 2012
10979*2012
Minimum information about a microarray experiment (MIAME)—toward standards for microarray data
A Brazma, P Hingamp, J Quackenbush, G Sherlock, P Spellman, ...
Nature genetics 29 (4), 365-371, 2001
44632001
Knowledge-based analysis of microarray gene expression data by using support vector machines
MPS Brown, WN Grundy, D Lin, N Cristianini, CW Sugnet, TS Furey, ...
Proceedings of the National Academy of Sciences 97 (1), 262-267, 2000
29962000
International network of cancer genome projects
International Cancer Genome Consortium
Nature 464 (7291), 993, 2010
16622010
The PRIDE database and related tools and resources in 2019: improving support for quantification data
Y Perez-Riverol, A Csordas, J Bai, M Bernal-Llinares, S Hewapathirana, ...
Nucleic acids research 47 (D1), D442-D450, 2019
15412019
Transcriptome and genome sequencing uncovers functional variation in humans
T Lappalainen, M Sammeth, MR Friedlšnder, P Ac‘t Hoen, J Monlong, ...
Nature 501 (7468), 506-511, 2013
14402013
BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis
S Durinck, Y Moreau, A Kasprzyk, S Davis, B De Moor, A Brazma, ...
Bioinformatics 21 (16), 3439-3440, 2005
11622005
ArrayExpress—a public repository for microarray gene expression data at the EBI
A Brazma, H Parkinson, U Sarkans, M Shojatalab, J Vilo, ...
Nucleic acids research 31 (1), 68-71, 2003
9872003
Gene expression data analysis
A Brazma, J Vilo
FEBS letters 480 (1), 17-24, 2000
8062000
Global transcriptional responses of fission yeast to environmental stress
D Chen, WM Toone, J Mata, R Lyne, G Burns, K Kivinen, A Brazma, ...
Molecular biology of the cell 14 (1), 214-229, 2003
7942003
The HUPO PSI's molecular interaction format—a community standard for the representation of protein interaction data
H Hermjakob, L Montecchi-Palazzi, G Bader, J Wojcik, L Salwinski, ...
Nature biotechnology 22 (2), 177-183, 2004
6922004
ArrayExpress update—simplifying data submissions
N Kolesnikov, E Hastings, M Keays, O Melnichuk, YA Tang, E Williams, ...
Nucleic acids research 43 (D1), D1113-D1116, 2015
6472015
ArrayExpress—a public database of microarray experiments and gene expression profiles
H Parkinson, M Kapushesky, M Shojatalab, N Abeygunawardena, ...
Nucleic acids research 35 (suppl_1), D747-D750, 2007
6282007
Design and implementation of microarray gene expression markup language (MAGE-ML)
PT Spellman, M Miller, J Stewart, C Troup, U Sarkans, S Chervitz, ...
Genome biology 3 (9), 1-9, 2002
5552002
Periodic gene expression program of the fission yeast cell cycle
G Rustici, J Mata, K Kivinen, P Liů, CJ Penkett, G Burns, J Hayles, ...
Nature genetics 36 (8), 809-817, 2004
5542004
Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project
CF Taylor, D Field, SA Sansone, J Aerts, R Apweiler, M Ashburner, ...
Nature biotechnology 26 (8), 889-896, 2008
5232008
ArrayExpress update—from an archive of functional genomics experiments to the atlas of gene expression
H Parkinson, M Kapushesky, N Kolesnikov, G Rustici, M Shojatalab, ...
Nucleic acids research 37 (suppl_1), D868-D872, 2009
4872009
Predicting gene regulatory elements in silico on a genomic scale
A Brāzma, I Jonassen, J Vilo, E Ukkonen
Genome research 8 (11), 1202-1215, 1998
4531998
Approaches to the automatic discovery of patterns in biosequences
A Brazma, I Jonassen, I Eidhammer, D Gilbert
Journal of computational biology 5 (2), 279-305, 1998
4481998
Expression Atlas update—an integrated database of gene and protein expression in humans, animals and plants
R Petryszak, M Keays, YA Tang, NA Fonseca, E Barrera, T Burdett, ...
Nucleic acids research 44 (D1), D746-D752, 2016
4472016
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