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Hao Chi
Hao Chi
Institute of Computing Technology, Chinese Academy of Sciences
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Cited by
Year
Identification of cross-linked peptides from complex samples
B Yang, YJ Wu, M Zhu, SB Fan, J Lin, K Zhang, S Li, H Chi, YX Li, ...
Nature methods 9 (9), 904-906, 2012
6132012
A high-speed search engine pLink 2 with systematic evaluation for proteome-scale identification of cross-linked peptides
ZL Chen, JM Meng, Y Cao, JL Yin, RQ Fang, SB Fan, C Liu, WF Zeng, ...
Nature communications 10 (1), 3404, 2019
3982019
Comprehensive identification of peptides in tandem mass spectra using an efficient open search engine
H Chi, C Liu, H Yang, WF Zeng, L Wu, WJ Zhou, RM Wang, XN Niu, ...
Nature biotechnology 36 (11), 1059-1061, 2018
3372018
pGlyco 2.0 enables precision N-glycoproteomics with comprehensive quality control and one-step mass spectrometry for intact glycopeptide identification
MQ Liu, WF Zeng, P Fang, WQ Cao, C Liu, GQ Yan, Y Zhang, C Peng, ...
Nature communications 8 (1), 438, 2017
3002017
pDeep: predicting MS/MS spectra of peptides with deep learning
XX Zhou, WF Zeng, H Chi, C Luo, C Liu, J Zhan, SM He, Z Zhang
Analytical chemistry 89 (23), 12690-12697, 2017
2342017
pNovo: De novo Peptide Sequencing and Identification Using HCD Spectra
H Chi, RX Sun, B Yang, CQ Song, LH Wang, C Liu, Y Fu, ZF Yuan, ...
Journal of proteome research 9 (5), 2713-2724, 2010
1922010
pGlyco: a pipeline for the identification of intact N-glycopeptides by using HCD-and CID-MS/MS and MS3
WF Zeng, MQ Liu, Y Zhang, JQ Wu, P Fang, C Peng, A Nie, G Yan, W Cao, ...
Scientific reports 6 (1), 25102, 2016
1082016
pNovo+: de novo peptide sequencing using complementary HCD and ETD tandem mass spectra
H Chi, H Chen, K He, L Wu, B Yang, RX Sun, J Liu, WF Zeng, CQ Song, ...
Journal of proteome research 12 (2), 615-625, 2013
1082013
A Strategy for Precise and Large Scale Identification of Core Fucosylated Glycoproteins* S
W Jia, Z Lu, Y Fu, HP Wang, LH Wang, H Chi, ZF Yuan, ZB Zheng, ...
Molecular & Cellular Proteomics 8 (5), 913-923, 2009
1052009
MS/MS spectrum prediction for modified peptides using pDeep2 trained by transfer learning
WF Zeng, XX Zhou, WJ Zhou, H Chi, J Zhan, SM He
Analytical chemistry 91 (15), 9724-9731, 2019
952019
Open MS/MS spectral library search to identify unanticipated post-translational modifications and increase spectral identification rate
D Ye, Y Fu, RX Sun, HP Wang, ZF Yuan, H Chi, SM He
Bioinformatics 26 (12), i399-i406, 2010
912010
pNovo 3: precise de novo peptide sequencing using a learning-to-rank framework
H Yang, H Chi, WF Zeng, WJ Zhou, SM He
Bioinformatics 35 (14), i183-i190, 2019
872019
pQuant improves quantitation by keeping out interfering signals and evaluating the accuracy of calculated ratios
C Liu, CQ Song, ZF Yuan, Y Fu, H Chi, LH Wang, SB Fan, K Zhang, ...
Analytical chemistry 86 (11), 5286-5294, 2014
782014
pFind–Alioth: A novel unrestricted database search algorithm to improve the interpretation of high-resolution MS/MS data
H Chi, K He, B Yang, Z Chen, RX Sun, SB Fan, K Zhang, C Liu, ZF Yuan, ...
Journal of proteomics 125, 89-97, 2015
762015
pParse: A method for accurate determination of monoisotopic peaks in high‐resolution mass spectra
ZF Yuan, C Liu, HP Wang, RX Sun, Y Fu, JF Zhang, LH Wang, H Chi, Y Li, ...
Proteomics 12 (2), 226-235, 2012
742012
pTop 1.0: a high-accuracy and high-efficiency search engine for intact protein identification
RX Sun, L Luo, L Wu, RM Wang, WF Zeng, H Chi, C Liu, SM He
Analytical chemistry 88 (6), 3082-3090, 2016
702016
Nematode sperm maturation triggered by protease involves sperm-secreted serine protease inhibitor (Serpin)
Y Zhao, W Sun, P Zhang, H Chi, MJ Zhang, CQ Song, X Ma, Y Shang, ...
Proceedings of the National Academy of Sciences 109 (5), 1542-1547, 2012
642012
Improved peptide identification for proteomic analysis based on comprehensive characterization of electron transfer dissociation spectra
RX Sun, MQ Dong, CQ Song, H Chi, B Yang, LY Xiu, L Tao, ZY Jing, C Liu, ...
Journal of Proteome Research 9 (12), 6354-6367, 2010
452010
Open-pNovo: de novo peptide sequencing with thousands of protein modifications
H Yang, H Chi, WJ Zhou, WF Zeng, K He, C Liu, RX Sun, SM He
Journal of proteome research 16 (2), 645-654, 2017
442017
A theoretical foundation of the target-decoy search strategy for false discovery rate control in proteomics
K He, Y Fu, WF Zeng, L Luo, H Chi, C Liu, LY Qing, RX Sun, SM He
arXiv preprint arXiv:1501.00537, 2015
432015
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