Dmitry Antipov
Dmitry Antipov
Verified email at spbu.ru
Title
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Cited by
Year
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing
A Bankevich, S Nurk, D Antipov, AA Gurevich, M Dvorkin, AS Kulikov, ...
Journal of computational biology 19 (5), 455-477, 2012
120682012
Assembling single-cell genomes and mini-metagenomes from chimeric MDA products
S Nurk, A Bankevich, D Antipov, AA Gurevich, A Korobeynikov, A Lapidus, ...
Journal of Computational Biology 20 (10), 714-737, 2013
7712013
Assembling genomes and mini-metagenomes from highly chimeric reads
S Nurk, A Bankevich, D Antipov, A Gurevich, A Korobeynikov, A Lapidus, ...
Annual International Conference on Research in Computational Molecular …, 2013
4552013
plasmidSPAdes: assembling plasmids from whole genome sequencing data
D Antipov, N Hartwick, M Shen, M Raiko, A Lapidus, PA Pevzner
Bioinformatics 32 (22), 3380-3387, 2016
2862016
hybridSPAdes: an algorithm for hybrid assembly of short and long reads
D Antipov, A Korobeynikov, JS McLean, PA Pevzner
Bioinformatics 32 (7), 1009-1015, 2016
2612016
492 Nikolenko SI, Pham S, Prjibelski AD, Pyshkin AV, Sirotkin AV, Vyahhi N, Tesler G, 493 Alekseyev MA, Pevzner PA. 2012. SPAdes: a new genome assembly algorithm and 494 its …
A Bankevich, S Nurk, D Antipov, AA Gurevich, M Dvorkin, AS Kulikov, ...
J Comput Biol 19, 455-77, 0
209
Versatile genome assembly evaluation with QUAST-LG
A Mikheenko, A Prjibelski, V Saveliev, D Antipov, A Gurevich
Bioinformatics 34 (13), i142-i150, 2018
1862018
rnaSPAdes: a de novo transcriptome assembler and its application to RNA-Seq data
E Bushmanova, D Antipov, A Lapidus, AD Prjibelski
GigaScience 8 (9), giz100, 2019
982019
rnaQUAST: a quality assessment tool for de novo transcriptome assemblies
E Bushmanova, D Antipov, A Lapidus, V Suvorov, AD Prjibelski
Bioinformatics 32 (14), 2210-2212, 2016
652016
Plasmid detection and assembly in genomic and metagenomic data sets
D Antipov, M Raiko, A Lapidus, PA Pevzner
Genome research 29 (6), 961-968, 2019
282019
Pathset graphs: a novel approach for comprehensive utilization of paired reads in genome assembly
SK Pham, D Antipov, A Sirotkin, G Tesler, PA Pevzner, MA Alekseyev
Journal of Computational Biology 20 (4), 359-371, 2013
242013
Metaviral SPAdes: assembly of viruses from metagenomic data
D Antipov, M Raiko, A Lapidus, PA Pevzner
Bioinformatics 36 (14), 4126-4129, 2020
142020
Using SPAdes de novo assembler
A Prjibelski, D Antipov, D Meleshko, A Lapidus, A Korobeynikov
Current Protocols in Bioinformatics 70 (1), e102, 2020
122020
other authors (2012)
A Bankevich, S Nurk, D Antipov, AA Gurevich, M Dvorkin, AS Kulikov, ...
SPAdes: a new genome assembly algorithm and its applications to single-cell …, 0
7
Analysis of metagenome-assembled viral genomes from the human gut reveals diverse putative CrAss-like phages with unique genomic features
N Yutin, S Benler, SA Shmakov, YI Wolf, I Tolstoy, M Rayko, D Antipov, ...
Nature communications 12 (1), 1-11, 2021
32021
Thousands of previously unknown phages discovered in whole-community human gut metagenomes
S Benler, N Yutin, D Antipov, M Rayko, S Shmakov, AB Gussow, ...
Microbiome 9 (1), 1-17, 2021
22021
Unique genomic features of crAss-like phages, the dominant component of the human gut virome
N Yutin, S Benler, SA Shmakov, YI Wolf, I Tolstoy, M Rayko, D Antipov, ...
bioRxiv, 2020
22020
Extending rnaSPAdes functionality for hybrid transcriptome assembly
AD Prjibelski, GD Puglia, D Antipov, E Bushmanova, D Giordano, ...
BMC bioinformatics 21 (12), 1-9, 2020
12020
SPAligner: alignment of long diverged molecular sequences to assembly graphs
T Dvorkina, D Antipov, A Korobeynikov, S Nurk
BMC bioinformatics 21 (12), 1-14, 2020
12020
Extending rnaSPAdes functionality for hybrid transcriptome assembly
A Prjibelski, E Bushmanova, D Giordano, A Mikheenko, G Puglia, ...
BMC Bioinformatics 20 (S17), O9, 2019
12019
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