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Dmitry Antipov
Dmitry Antipov
Verified email at nih.gov
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SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing
A Bankevich, S Nurk, D Antipov, AA Gurevich, M Dvorkin, AS Kulikov, ...
Journal of computational biology 19 (5), 455-477, 2012
219442012
Using SPAdes de novo assembler
A Prjibelski, D Antipov, D Meleshko, A Lapidus, A Korobeynikov
Current protocols in bioinformatics 70 (1), e102, 2020
13202020
Assembling single-cell genomes and mini-metagenomes from chimeric MDA products
S Nurk, A Bankevich, D Antipov, AA Gurevich, A Korobeynikov, A Lapidus, ...
Journal of Computational Biology 20 (10), 714-737, 2013
11792013
Assembling genomes and mini-metagenomes from highly chimeric reads
S Nurk, A Bankevich, D Antipov, A Gurevich, A Korobeynikov, A Lapidus, ...
Research in Computational Molecular Biology: 17th Annual International …, 2013
7992013
Versatile genome assembly evaluation with QUAST-LG
A Mikheenko, A Prjibelski, V Saveliev, D Antipov, A Gurevich
Bioinformatics 34 (13), i142-i150, 2018
7972018
hybridSPAdes: an algorithm for hybrid assembly of short and long reads
D Antipov, A Korobeynikov, JS McLean, PA Pevzner
Bioinformatics 32 (7), 1009-1015, 2016
5332016
plasmidSPAdes: assembling plasmids from whole genome sequencing data
D Antipov, N Hartwick, M Shen, M Raiko, A Lapidus, PA Pevzner
Bioinformatics 32 (22), 3380-3387, 2016
5172016
rnaSPAdes: a de novo transcriptome assembler and its application to RNA-Seq data
E Bushmanova, D Antipov, A Lapidus, AD Prjibelski
GigaScience 8 (9), giz100, 2019
5152019
Critical assessment of metagenome interpretation: the second round of challenges
F Meyer, A Fritz, ZL Deng, D Koslicki, TR Lesker, A Gurevich, G Robertson, ...
Nature methods 19 (4), 429-440, 2022
1962022
Versatile genome assembly evaluation with QUAST-LG. Bioinformatics 34: i142–i150
A Mikheenko, A Prjibelski, V Saveliev, D Antipov, A Gurevich
1662018
Metaviral SPAdes: assembly of viruses from metagenomic data
D Antipov, M Raiko, A Lapidus, PA Pevzner
Bioinformatics 36 (14), 4126-4129, 2020
1642020
492 Nikolenko SI, Pham S, Prjibelski AD, Pyshkin AV, Sirotkin AV, Vyahhi N, Tesler G, 493 Alekseyev MA, Pevzner PA. 2012. SPAdes: a new genome assembly algorithm and 494 its …
A Bankevich, S Nurk, D Antipov, AA Gurevich, M Dvorkin, AS Kulikov, ...
J Comput Biol 19, 455-77, 0
137
Thousands of previously unknown phages discovered in whole-community human gut metagenomes
S Benler, N Yutin, D Antipov, M Rayko, S Shmakov, AB Gussow, ...
Microbiome 9, 1-17, 2021
1282021
rnaQUAST: a quality assessment tool for de novo transcriptome assemblies
E Bushmanova, D Antipov, A Lapidus, V Suvorov, AD Prjibelski
Bioinformatics 32 (14), 2210-2212, 2016
1262016
Plasmid detection and assembly in genomic and metagenomic data sets
D Antipov, M Raiko, A Lapidus, PA Pevzner
Genome research 29 (6), 961-968, 2019
1242019
Analysis of metagenome-assembled viral genomes from the human gut reveals diverse putative CrAss-like phages with unique genomic features
N Yutin, S Benler, SA Shmakov, YI Wolf, I Tolstoy, M Rayko, D Antipov, ...
Nature communications 12 (1), 1044, 2021
1002021
Multiplex de Bruijn graphs enable genome assembly from long, high-fidelity reads
A Bankevich, AV Bzikadze, M Kolmogorov, D Antipov, PA Pevzner
Nature biotechnology 40 (7), 1075-1081, 2022
642022
rnaSPAdes: a de novo transcriptome assembler and its application to RNA-Seq data. Gigascience 8: giz100
E Bushmanova, D Antipov, A Lapidus, AD Prjibelski
582019
Extending rnaSPAdes functionality for hybrid transcriptome assembly
AD Prjibelski, GD Puglia, D Antipov, E Bushmanova, D Giordano, ...
BMC bioinformatics 21, 1-9, 2020
332020
Pathset graphs: a novel approach for comprehensive utilization of paired reads in genome assembly
SK Pham, D Antipov, A Sirotkin, G Tesler, PA Pevzner, MA Alekseyev
Journal of Computational Biology 20 (4), 359-371, 2013
282013
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Articles 1–20