Sofia K. Forslund

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Peer BorkDirector of EMBL HeidelbergVerified email at embl.de
Jaime Huerta-CepasGroup Leader at CBGP (UPM-INIA-CSIC), Madrid, SpainVerified email at embl.de
Christian von MeringProfessor of Computational Biology, University of Zurich and Swiss Institute of BioinformaticsVerified email at imls.uzh.ch
Damian SzklarczykSIB Swiss Institute of Bioinformatics / University of ZurichVerified email at isb-sib.ch
Lars Juhl JensenUniversity of CopenhagenVerified email at cpr.ku.dk
Shinichi SunagawaETH Zurich; Swiss Institute of BioinformaticsVerified email at ethz.ch
Michael Kuhnresearch staff scientist & research coordinator in the lab of Peer Bork, EMBLVerified email at embl.de
Alex BatemanHead of Protein Sequence Resources, EMBL-EBIVerified email at ebi.ac.uk
Robert D. FinnMicrobiome Informatics Team Leader, EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, Cambs, CB10 1SDVerified email at ebi.ac.uk
Daniel R. MendeAsst. Professor, Amsterdam University Medical Center, University of AmsterdamVerified email at amsterdamumc.nl
Alexander RothUniversity of ZurichVerified email at uzh.ch
Jens Roat KultimaDanish Competition and Consumer Agency; Bioinformatics and Economic Fraud SpecialistVerified email at kfst.dk
Manimozhiyan ArumugamAssociate Professor, Faculty of Health and Medical Sciences, University of CopenhagenVerified email at sund.ku.dk
Toni GabaldonGroup Leader, Institute for Research in Biomedicine (IRB), Barcelona Supercomputing Centre (BSC)Verified email at crg.es
Chris CreeveyProfessor of Computational Biology, Queen’s University BelfastVerified email at qub.ac.uk
Barbara HollandSchool of Natural Sciences (Maths), University of Tasmania, HobartVerified email at utas.edu.au
Korbinian StrimmerDepartment of Mathematics, The University of ManchesterVerified email at manchester.ac.uk
Dr. Fabian SchreiberMedical Data Scientist, Charite BerlinVerified email at charite.de
Daniel H. HusonProfessor of Algorithms in Bioinformatics, University of TuebingenVerified email at uni-tuebingen.de

Sofia K. Forslund

Junior Group Leader, ECRC (joint Max Delbrück Center and Charité University Hospital unit), Berlin

Verified email at embl.de - Homepage

Cardiovascular and metabolic disease systems medicine evolutionary bioinformatics host-microbiome analysis antibiotic resist


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STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets D Szklarczyk, AL Gable, D Lyon, A Junge, S Wyder, J Huerta-Cepas, ... Nucleic acids research 47 (D1), D607-D613, 2019	12926	2019
The Pfam protein families database M Punta, PC Coggill, RY Eberhardt, J Mistry, J Tate, C Boursnell, N Pang, ... Nucleic acids research 40 (D1), D290-D301, 2012	10455*	2012
STRING v10: protein–protein interaction networks, integrated over the tree of life D Szklarczyk, A Franceschini, S Wyder, K Forslund, D Heller, ... Nucleic acids research 43 (D1), D447-D452, 2015	9669	2015
eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses J Huerta-Cepas, D Szklarczyk, D Heller, A Hernández-Plaza, SK Forslund, ... Nucleic acids research 47 (D1), D309-D314, 2019	2337	2019
Fast genome-wide functional annotation through orthology assignment by eggNOG-mapper J Huerta-Cepas, K Forslund, LP Coelho, D Szklarczyk, LJ Jensen, ... Molecular biology and evolution 34 (8), 2115-2122, 2017	1999	2017
Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota K Forslund, F Hildebrand, T Nielsen, G Falony, E Le Chatelier, ... Nature 528 (7581), 262-266, 2015	1863	2015
eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences J Huerta-Cepas, D Szklarczyk, K Forslund, H Cook, D Heller, MC Walter, ... Nucleic acids research 44 (D1), D286-D293, 2016	1838	2016
Human gut microbes impact host serum metabolome and insulin sensitivity HK Pedersen, V Gudmundsdottir, HB Nielsen, T Hyotylainen, T Nielsen, ... Nature 535 (7612), 376-381, 2016	1638	2016
Structure and function of the global topsoil microbiome M Bahram, F Hildebrand, SK Forslund, JL Anderson, NA Soudzilovskaia, ... Nature 560 (7717), 233-237, 2018	1406	2018
Salt-responsive gut commensal modulates T_H17 axis and disease N Wilck, MG Matus, SM Kearney, SW Olesen, K Forslund, ... Nature 551 (7682), 585-589, 2017	1010	2017
InParanoid 7: new algorithms and tools for eukaryotic orthology analysis G Östlund, T Schmitt, K Forslund, T Köstler, DN Messina, S Roopra, ... Nucleic acids research 38 (suppl_1), D196-D203, 2010	699	2010
Intestinal microbiome is related to lifetime antibiotic use in Finnish pre-school children K Korpela, A Salonen, LJ Virta, RA Kekkonen, K Forslund, P Bork, ... Nature communications 7 (1), 10410, 2016	664	2016
eggNOG v4. 0: nested orthology inference across 3686 organisms S Powell, K Forslund, D Szklarczyk, K Trachana, A Roth, J Huerta-Cepas, ... Nucleic acids research 42 (D1), D231-D239, 2014	562	2014
Recovery of gut microbiota of healthy adults following antibiotic exposure A Palleja, KH Mikkelsen, SK Forslund, A Kashani, KH Allin, T Nielsen, ... Nature microbiology 3 (11), 1255-1265, 2018	530	2018
Short-chain fatty acid propionate protects from hypertensive cardiovascular damage H Bartolomaeus, A Balogh, M Yakoub, S Homann, L Markó, S Höges, ... Circulation 139 (11), 1407-1421, 2019	496	2019
Metagenomic species profiling using universal phylogenetic marker genes S Sunagawa, DR Mende, G Zeller, F Izquierdo-Carrasco, SA Berger, ... Nature methods 10 (12), 1196-1199, 2013	488	2013
Country-specific antibiotic use practices impact the human gut resistome K Forslund, S Sunagawa, JR Kultima, DR Mende, M Arumugam, A Typas, ... Genome research 23 (7), 1163-1169, 2013	421	2013
Propionic acid shapes the multiple sclerosis disease course by an immunomodulatory mechanism A Duscha, B Gisevius, S Hirschberg, N Yissachar, GI Stangl, E Eilers, ... Cell 180 (6), 1067-1080. e16, 2020	358	2020
Statin therapy is associated with lower prevalence of gut microbiota dysbiosis S Vieira-Silva, G Falony, E Belda, T Nielsen, J Aron-Wisnewsky, ... Nature 581 (7808), 310-315, 2020	286	2020
Similarity of the dog and human gut microbiomes in gene content and response to diet LP Coelho, JR Kultima, PI Costea, C Fournier, Y Pan, ... Microbiome 6 (1), 1-11, 2018	233	2018

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