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Mikhail Rayko
Mikhail Rayko
Institute of Cytology RAS, ITMO University
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metaFlye: scalable long-read metagenome assembly using repeat graphs
M Kolmogorov, DM Bickhart, B Behsaz, A Gurevich, M Rayko, SB Shin, ...
Nature Methods 17 (11), 1103-1110, 2020
6242020
plasmidSPAdes: assembling plasmids from whole genome sequencing data
D Antipov, N Hartwick, M Shen, M Raiko, A Lapidus, PA Pevzner
Bioinformatics 32 (22), 3380-3387, 2016
5412016
Metaviral SPAdes: assembly of viruses from metagenomic data
D Antipov, M Raiko, A Lapidus, PA Pevzner
Bioinformatics 36 (14), 4126-4129, 2020
2012020
Thousands of previously unknown phages discovered in whole-community human gut metagenomes
S Benler, N Yutin, D Antipov, M Rayko, S Shmakov, AB Gussow, ...
Microbiome 9, 1-17, 2021
1522021
Plasmid detection and assembly in genomic and metagenomic data sets
D Antipov, M Raiko, A Lapidus, PA Pevzner
Genome research 29 (6), 961-968, 2019
1402019
White shark genome reveals ancient elasmobranch adaptations associated with wound healing and the maintenance of genome stability
NJ Marra, MJ Stanhope, NK Jue, M Wang, Q Sun, P Pavinski Bitar, ...
Proceedings of the National Academy of Sciences 116 (10), 4446-4455, 2019
1302019
Pangolin genomes and the evolution of mammalian scales and immunity
SW Choo, M Rayko, TK Tan, R Hari, A Komissarov, WY Wee, ...
Genome research 26 (10), 1312-1322, 2016
1172016
Analysis of metagenome-assembled viral genomes from the human gut reveals diverse putative CrAss-like phages with unique genomic features
N Yutin, S Benler, SA Shmakov, YI Wolf, I Tolstoy, M Rayko, D Antipov, ...
Nature communications 12 (1), 1044, 2021
1132021
GAP‐43 regulates NCAM‐180‐mediated neurite outgrowth
I Korshunova, V Novitskaya, D Kiryushko, N Pedersen, K Kolkova, ...
Journal of neurochemistry 100 (6), 1599-1612, 2007
1012007
Assembly of the Boechera retrofracta Genome and Evolutionary Analysis of Apomixis-Associated Genes
S Kliver, M Rayko, A Komissarov, E Bakin, D Zhernakova, K Prasad, ...
Genes 9 (4), 185, 2018
312018
The genome-wide analysis of carcinoembryonic antigen signaling by colorectal cancer cells using RNA sequencing
O Bajenova, A Gorbunova, I Evsyukov, M Rayko, S Gapon, E Bozhokina, ...
PloS one 11 (9), e0161256, 2016
222016
viralFlye: assembling viruses and identifying their hosts from long-read metagenomics data
D Antipov, M Rayko, M Kolmogorov, PA Pevzner
Genome biology 23 (1), 57, 2022
172022
Quality control of low-frequency variants in SARS-CoV-2 genomes
M Rayko, A Komissarov
BioRxiv, 2020.04. 26.062422, 2020
142020
Draft genome of Bugula neritina, a colonial animal packing powerful symbionts and potential medicines
M Rayko, A Komissarov, JC Kwan, G Lim-Fong, AC Rhodes, S Kliver, ...
Scientific data 7 (1), 356, 2020
132020
Molecular phylogenetic study of the genus Colpodium sensu lato (Poaceae: Poeae)
AV Rodionov, ES Kim, NN Nosov, MP Raiko, EM Machs, EO Punina
Ecological genetics 6 (4), 34-46, 2008
122008
Молекулярно-филогенетическое исследование видов рода Colpodium sensu lato (Роеае, Роасеае)
АВ Родионов, ЕС Ким, НН Носов, МП Райко, ЭМ Мачс, ЕО Пунина
Экологическая генетика 6 (4), 21-25, 2008
122008
PGD: a pangolin genome hub for the research community
TK Tan, KY Tan, R Hari, A Mohamed Yusoff, GJ Wong, CC Siow, ...
Database 2016, baw063, 2016
102016
Analysis of metagenome-assembled viral genomes from the human gut reveals diverse putative CrAss-like phages with unique genomic features. Nat Commun 12: 1044
N Yutin, S Benler, SA Shmakov, YI Wolf, I Tolstoy, M Rayko, D Antipov, ...
92021
Филогеография таксонов рода Cypripedium (Orchidaceae) на территории России
ЕВ Андронова, ЭМ Мачс, ЕГ Филиппов, МП Райко, Л Янг-Ай, ...
Ботанический журнал 102 (8), 1027-1059, 2017
82017
Agricultural crops grown in laboratory conditions on Chernevaya taiga soil demonstrate unique composition of the rhizosphere microbiota
I Kravchenko, M Rayko, E Tikhonova, A Konopkin, E Abakumov, ...
Microorganisms 10 (11), 2171, 2022
72022
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Articles 1–20