Fabio Pardi
Fabio Pardi
Research Fellow, CNRS, France
Verified email at - Homepage
Cited by
Cited by
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
Management Group Liefer Laura A. 51 Wetterstrand Kris A. 51 Good Peter J. 51 ...
nature 447 (7146), 799-816, 2007
Meta-analysis of genome scans of age-related macular degeneration
SA Fisher, GR Abecasis, BM Yashar, S Zareparsi, A Swaroop, SK Iyengar, ...
Human molecular genetics 14 (15), 2257-2264, 2005
Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome
EH Margulies, GM Cooper, G Asimenos, DJ Thomas, CN Dewey, A Siepel, ...
Genome research 17 (6), 760-774, 2007
Species choice for comparative genomics: being greedy works
F Pardi, N Goldman
PLoS Genetics 1 (6), e71, 2005
Reconstructible Phylogenetic Networks: Do Not Distinguish the Indistinguishable
F Pardi, C Scornavacca
PLoS Computational Biology 11 (4), e1004135, 2015
Resource-aware taxon selection for maximizing phylogenetic diversity
F Pardi, N Goldman
Systematic biology 56 (3), 431-444, 2007
Rapid alignment-free phylogenetic identification of metagenomic sequences
B Linard, K Swenson, F Pardi
Bioinformatics 35 (18), 3303-3312, 2019
Distribution of phylogenetic diversity under random extinction
B Faller, F Pardi, M Steel
Journal of theoretical biology 251 (2), 286-296, 2008
Approximate maximum parsimony and ancestral maximum likelihood
N Alon, B Chor, F Pardi, A Rapoport
IEEE/ACM Transactions on Computational Biology and Bioinformatics 7 (1), 183-187, 2008
Fast and accurate branch lengths estimation for phylogenomic trees
M Binet, O Gascuel, C Scornavacca, EJ P. Douzery, F Pardi
BMC bioinformatics 17, 1-18, 2016
GSMA: software implementation of the genome search meta-analysis method
F Pardi, DF Levinson, CM Lewis
Bioinformatics 21 (24), 4430-4431, 2005
Determination and validation of principal gene products
ML Tress, JJ Wesselink, A Frankish, G López, N Goldman, A Löytynoja, ...
Bioinformatics 24 (1), 11-17, 2008
Algorithms on phylogenetic trees
F Pardi
University of Cambridge, 2009
Rearrangement moves on rooted phylogenetic networks
P Gambette, L Van Iersel, M Jones, M Lafond, F Pardi, C Scornavacca
PLoS computational biology 13 (8), e1005611, 2017
SNP selection for association studies: maximizing power across SNP choice and study size
F Pardi, CM Lewis, JC Whittaker
Annals of Human Genetics 69 (6), 733-746, 2005
Combinatorics of distance-based tree inference
F Pardi, O Gascuel
Proceedings of the National Academy of Sciences 109 (41), 16443-16448, 2012
Robustness of phylogenetic inference based on minimum evolution
F Pardi, S Guillemot, O Gascuel
Bulletin of mathematical biology 72 (7), 1820-1839, 2010
Distance-based methods in phylogenetics
F Pardi, O Gascuel
Budgeted phylogenetic diversity on circular split systems
BQ Minh, F Pardi, S Klaere, A von Haeseler
IEEE/ACM Transactions on Computational Biology and Bioinformatics 6 (1), 22-29, 2008
On the inference of complex phylogenetic networks by Markov Chain Monte-Carlo
CE Rabier, V Berry, M Stoltz, JD Santos, W Wang, JC Glaszmann, F Pardi, ...
PLoS Computational Biology 17 (9), e1008380, 2021
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