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Arif Ozgun Harmanci
Arif Ozgun Harmanci
University of Texas Health Sciences Center at Houston
Verified email at yale.edu
Title
Cited by
Cited by
Year
An integrated encyclopedia of DNA elements in the human genome.
EP Consortium.
Nature 6 (489), 7414, 2012
16827*2012
An integrated map of genetic variation from 1,092 human genomes
1000 Genomes Project Consortium
Nature 491 (7422), 56, 2012
82992012
Pan-cancer analysis of whole genomes
Nature 578 (7793), 82-93, 2020
1786*2020
Architecture of the human regulatory network derived from ENCODE data
MB Gerstein, A Kundaje, M Hariharan, SG Landt, KK Yan, C Cheng, ...
Nature 489 (7414), 91-100, 2012
16842012
Integrating sequence and array data to create an improved 1000 Genomes Project haplotype reference panel
O Delaneau, J Marchini
Nature communications 5 (1), 3934, 2014
4452014
Integrative annotation of variants from 1092 humans: application to cancer genomics
E Khurana, Y Fu, V Colonna, XJ Mu, HM Kang, T Lappalainen, A Sboner, ...
Science 342 (6154), 1235587, 2013
4202013
AlleleSeq: analysis of allele‐specific expression and binding in a network framework
J Rozowsky, A Abyzov, J Wang, P Alves, D Raha, A Harmanci, J Leng, ...
Molecular systems biology 7 (1), 522, 2011
3982011
Comparative analysis of the transcriptome across distant species
MB Gerstein, J Rozowsky, KK Yan, D Wang, C Cheng, JB Brown, ...
Nature 512 (7515), 445-448, 2014
3342014
Efficient pairwise RNA structure prediction using probabilistic alignment constraints in Dynalign
AO Harmanci, G Sharma, DH Mathews
BMC bioinformatics 8, 1-21, 2007
1502007
HDAC inhibitors elicit metabolic reprogramming by targeting super-enhancers in glioblastoma models
TTT Nguyen, Y Zhang, E Shang, C Shu, C Torrini, J Zhao, E Bianchetti, ...
The Journal of clinical investigation 130 (7), 3699-3716, 2020
1272020
CaSpER identifies and visualizes CNV events by integrative analysis of single-cell or bulk RNA-sequencing data
A Serin Harmanci, AO Harmanci, X Zhou
Nature communications 11 (1), 89, 2020
1262020
Passenger mutations in more than 2,500 cancer genomes: overall molecular functional impact and consequences
S Kumar, J Warrell, S Li, PD McGillivray, W Meyerson, L Salichos, ...
Cell 180 (5), 915-927. e16, 2020
1232020
An integrative ENCODE resource for cancer genomics
J Zhang, D Lee, V Dhiman, P Jiang, J Xu, P McGillivray, H Yang, J Liu, ...
Nature communications 11 (1), 3696, 2020
1172020
TurboFold: iterative probabilistic estimation of secondary structures for multiple RNA sequences
AO Harmanci, G Sharma, DH Mathews
BMC bioinformatics 12, 1-22, 2011
1142011
A uniform survey of allele-specific binding and expression over 1000-Genomes-Project individuals
J Chen, J Rozowsky, TR Galeev, A Harmanci, R Kitchen, J Bedford, ...
Nature communications 7 (1), 11101, 2016
1002016
Quantification of private information leakage from phenotype-genotype data: linking attacks
A Harmanci, M Gerstein
Nature methods 13 (3), 251-256, 2016
1002016
Enhanced transcriptome maps from multiple mouse tissues reveal evolutionary constraint in gene expression
DD Pervouchine, S Djebali, A Breschi, CA Davis, PP Barja, A Dobin, ...
Nature communications 6 (1), 5903, 2015
892015
VAT: a computational framework to functionally annotate variants in personal genomes within a cloud-computing environment
L Habegger, S Balasubramanian, DZ Chen, E Khurana, A Sboner, ...
Bioinformatics 28 (17), 2267-2269, 2012
832012
MUSIC: identification of enriched regions in ChIP-Seq experiments using a mappability-corrected multiscale signal processing framework
A Harmanci, J Rozowsky, M Gerstein
Genome biology 15, 1-15, 2014
672014
PARTS: probabilistic alignment for RNA joinT secondary structure prediction
AO Harmanci, G Sharma, DH Mathews
Nucleic acids research 36 (7), 2406-2417, 2008
622008
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