Michael Baym
Michael Baym
Harvard Medical School
Verified email at - Homepage
Cited by
Cited by
Inexpensive Multiplexed Library Preparation for Megabase-Sized Genomes
M Baym, S Kryazhimskiy, TD Lieberman, H Chung, MM Desai, R Kishony
PLoS ONE 10 (5), e0128036, 2015
Multidrug evolutionary strategies to reverse antibiotic resistance
M Baym, LK Stone, R Kishony
Science 351 (6268), aad3292, 2016
IsoRankN: spectral methods for global alignment of multiple protein networks
CS Liao, K Lu, M Baym, R Singh, B Berger
Bioinformatics 25 (12), i253-i258, 2009
Spatiotemporal microbial evolution on antibiotic landscapes
M Baym, TD Lieberman, ED Kelsic, R Chait, R Gross, I Yelin, R Kishony
Science 353 (6304), 1147-1151, 2016
Engineered bacteria can function in the mammalian gut long-term as live diagnostics of inflammation
DT Riglar, TW Giessen, M Baym, SJ Kerns, MJ Niederhuber, RT Bronson, ...
Nature Biotechnology, 2017
Large-scale identification of genetic design strategies using local search
DS Lun, G Rockwell, NJ Guido, M Baym, JA Kelner, B Berger, JE Galagan, ...
Molecular systems biology 5 (1), 2009
Compressive Genomics
PR Loh, M Baym, B Berger
Nature Biotechnology 30 (7), 627-630, 2012
IsoBase: a database of functionally related proteins across PPI networks
D Park, R Singh, M Baym, CS Liao, B Berger
Nucleic acids research 39 (suppl 1), D295-D300, 2011
Delayed commitment to evolutionary fate in antibiotic resistance fitness landscapes
AC Palmer, E Toprak, M Baym, S Kim, A Veres, S Bershtein, R Kishony
Nature Communications 6, 7385, 2015
Rapid inference of antibiotic resistance and susceptibility by genomic neighbour typing
K Břinda, A Callendrello, KC Ma, DR MacFadden, T Charalampous, ...
Nature Microbiology, 1-10, 2020
System and Method for Monitoring Potential Spread of an Infectious Agent in an Environment
MH Baym, RA Hyde, MY Ishikawa, CT Tegreene, LL Wood
US Patent App. 13/890,549, 2013
Compressive genomics for protein databases
NM Daniels, A Gallant, J Peng, LJ Cowen, M Baym, B Berger
Bioinformatics 29 (13), i283-i290, 2013
Rapid Construction of a Whole-genome Transposon Insertion Collection for Shewanella oneidensis by Knockout Sudoku
M Baym, L Shaket, IA Anzai, O Adesina, B Barstow
Nature Communications 7, 13270, 2016
Compounds that select against the tetracycline-resistance efflux pump
LK Stone, M Baym, TD Lieberman, R Chait, J Clardy, R Kishony
Nature Chemical Biology 12 (11), 902-904, 2016
Systems and devices for sampling and profiling microbiota of skin
MH Baym, RA Hyde, JT Kare, EC Leuthardt, GL McKnight, TS Pan, ...
US Patent 9,186,278, 2015
Prophages encode phage-defense systems with cognate self-immunity
SV Owen, N Wenner, CL Dulberger, EV Rodwell, A Bowers-Barnard, ...
Cell Host & Microbe, 2021
Escape mutations circumvent a tradeoff between resistance to a beta-lactam and resistance to a beta-lactamase inhibitor
D Russ, F Glaser, ES Tamar, I Yelin, M Baym, ED Kelsic, C Zampaloni, ...
Nature Communications 11 (1), 1-9, 2020
Simplitigs as an efficient and scalable representation of de Bruijn graphs
K Břinda, M Baym, G Kucherov
Genome biology 22 (1), 1-24, 2021
The fitness landscape of the African Salmonella Typhimurium ST313 strain D23580 reveals unique properties of the pBT1 plasmid
R Canals, RR Chaudhuri, RE Steiner, SV Owen, N Quinones-Olvera, ...
PLOS Pathogens 15 (9), e1007948, 2019
Barcode extension for analysis and reconstruction of structures
C Myhrvold, M Baym, N Hanikel, LL Ong, JS Gootenberg, P Yin
Nature Communications 8, 14698, 2017
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