| Nucleosomes Are Context-Specific, H2A. Z-Modulated Barriers to RNA Polymerase CM Weber, S Ramachandran, S Henikoff Molecular Cell 53 (5), 819-830, 2014 | 416 | 2014 |
| Automated minimization of steric clashes in protein structures S Ramachandran, P Kota, F Ding, NV Dokholyan Proteins: Structure, Function, and Bioinformatics 79 (1), 261-270, 2011 | 326 | 2011 |
| Discrete molecular dynamics: an efficient and versatile simulation method for fine protein characterization D Shirvanyants, F Ding, D Tsao, S Ramachandran, NV Dokholyan The Journal of Physical Chemistry B 116 (29), 8375-8382, 2012 | 218 | 2012 |
| Transcription of Nearly All Yeast RNA Polymerase II-Transcribed Genes Is Dependent on Transcription Factor TFIID L Warfield, S Ramachandran, T Baptista, D Devys, L Tora, S Hahn Molecular Cell 68 (1), 118-129. e5, 2017 | 184 | 2017 |
| Precise genome-wide mapping of single nucleosomes and linkers in vivo RV Chereji, S Ramachandran, TD Bryson, S Henikoff Genome Biology 19 (1), 19, 2018 | 149 | 2018 |
| Transcriptional Regulators Compete with Nucleosomes Post-replication S Ramachandran, S Henikoff Cell 165 (3), 580-592, 2016 | 146 | 2016 |
| Transcription and Remodeling Produce Asymmetrically Unwrapped Nucleosomal Intermediates S Ramachandran, K Ahmad, S Henikoff Molecular cell 68 (6), 1038-1053. e4, 2017 | 125 | 2017 |
| Asymmetric nucleosomes flank promoters in the budding yeast genome S Ramachandran, GE Zentner, S Henikoff Genome research 25, 381–390, 2014 | 101 | 2014 |
| The budding yeast Centromere DNA Element II wraps a stable Cse4 hemisome in either orientation in vivo S Henikoff, S Ramachandran, K Krassovsky, TD Bryson, CA Codomo, ... eLife 3, e01861, 2014 | 98 | 2014 |
| Replicating nucleosomes S Ramachandran, S Henikoff Science Advances 1 (7), e1500587, 2015 | 84 | 2015 |
| Gaia: automated quality assessment of protein structure models P Kota, F Ding, S Ramachandran, NV Dokholyan Bioinformatics 27 (16), 2209-2215, 2011 | 62 | 2011 |
| ATP hydrolysis at one of the two sites in ABC transporters initiates transport related conformational transitions G Gyimesi, S Ramachandran, P Kota, NV Dokholyan, B Sarkadi, ... Biochimica et Biophysica Acta (BBA)-Biomembranes 1808 (12), 2954-2964, 2011 | 57 | 2011 |
| Cooperative binding between distant transcription factors is a hallmark of active enhancers S Rao, K Ahmad, S Ramachandran Molecular Cell, 2021 | 54 | 2021 |
| Structural determinants of skeletal muscle ryanodine receptor gating S Ramachandran, A Chakraborty, L Xu, Y Mei, M Samsó, NV Dokholyan, ... Journal of Biological Chemistry 288 (9), 6154-6165, 2013 | 53 | 2013 |
| Solution Structure of the DNA Damage Lesion 8-Oxoguanosine from Ultraviolet Resonance Raman Spectroscopy N Jayanth, S Ramachandran, M Puranik The Journal of Physical Chemistry A 113 (8), 1459-1471, 2009 | 49 | 2009 |
| Computational approaches to understanding protein aggregation in neurodegeneration RL Redler, D Shirvanyants, O Dagliyan, F Ding, DN Kim, P Kota, ... Journal of molecular cell biology 6 (2), 104-115, 2014 | 48 | 2014 |
| Structural basis for the sequence-dependent effects of platinum–DNA adducts S Ramachandran, BR Temple, SG Chaney, NV Dokholyan Nucleic acids research 37 (8), 2434-2448, 2009 | 39 | 2009 |
| A Structural Model for Vinculin Insertion into PIP2-Containing Membranes and the Effect of Insertion on Vinculin Activation and Localization PM Thompson, S Ramachandran, LB Case, CE Tolbert, A Tandon, ... Structure 25 (2), 264-275, 2017 | 34 | 2017 |
| Nucleosome dynamics during chromatin remodeling in vivo S Ramachandran, S Henikoff Nucleus 7 (1), 20-26, 2016 | 34 | 2016 |
| Flanking bases influence the nature of DNA distortion by platinum 1, 2-intrastrand (GG) cross-links D Bhattacharyya, S Ramachandran, S Sharma, W Pathmasiri, CL King, ... PLoS one 6 (8), e23582, 2011 | 28 | 2011 |
Nikolay DokholyanG. Thomas Passananti ProfessorVerified email at psu.edu
