Jens Allmer

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Citations	4686	1782
h-index	23	17
i10-index	49	33

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Malik YousefZefat Academic CollegeVerified email at zefat.ac.il
Müşerref Duygu Saçar DemirciBiyoinformatik, Abdullah Gül ÜniversitesiVerified email at agu.edu.tr
Anne FraryIzmir Institute of TechnologyVerified email at iyte.edu.tr
sami doganlarProfessor of Molecular Biology and Genetics, Izmir Institute of TechnologyVerified email at iyte.edu.tr
Michael HipplerUniversity of Münster, IBBP, Schlossplatz 8Verified email at uni-muenster.de
Mehmet GöktayMax Planck Institute for Plant Breeding Reasearch (PhD)Verified email at mpipz.mpg.de
Caner BağcıUniversity of TuebingenVerified email at uni-tuebingen.de
Hamid HamzeiyLife Science Consultant & Senior Postdoctoral Fellow @ Max Planck Institute of BiochemistryVerified email at biochem.mpg.de
Helmut KirchhoffInstitute of Biological Chemistry, Washington State UniversityVerified email at wsu.edu
İlhan Erkin AcarPostdoc at ETH ZurichVerified email at bsse.ethz.ch
Begum AluralMassachusetts General HospitalVerified email at mgh.harvard.edu
Şermin GENÇIzmir Biomedicine and Genome CenterVerified email at ibg.edu.tr
Kemal Uğur TüfekciAssoc. Prof./Doç. Dr., Izmir Demokrasi ÜniversitesiVerified email at idu.edu.tr
ibrahim ÇelikPhDVerified email at pau.edu.tr
Dalit LevyDepartment of Information System, Zefat Academic CollegeVerified email at zefat.ac.il
Hatice ŞelaleVerified email at iyte.edu.tr
Aysegul OzerdemMayo ClinicVerified email at mayo.edu
Jan BaumbachUniversity of HamburgVerified email at uni-hamburg.de
Mehmet Volkan CakirRudolf-Schönheimer-Institute für BiochemieVerified email at medizin.uni-leipzig.de
Sergey LashinInstitute of Cytology and Genetics SB RASVerified email at bionet.nsc.ru

Jens Allmer

Medical Informatics and Bioinformatics, Hochschule Ruhr-West, University of Applied Sciences

Verified email at allmer.de

Medical informatics bioinformatic workflow management


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The Chlamydomonas Genome Reveals the Evolution of Key Animal and Plant Functions SS Merchant, SE Prochnik, O Vallon, EH Harris, SJ Karpowicz, ... Science 318 (5848), 245-250, 2007	2979	2007
Comparative quantitative proteomics to investigate the remodeling of bioenergetic pathways under iron deficiency in *Chlamydomonas reinhardtii* B Naumann, A Busch, J Allmer, E Ostendorf, M Zeller, H Kirchhoff, ... Proteomics 7 (21), 3964-3979, 2007	201	2007
Algorithms for the de novo sequencing of peptides from tandem mass spectra J Allmer Expert review of proteomics 8 (5), 645-657, 2011	140	2011
Mass spectrometric genomic data mining: Novel insights into bioenergetic pathways in *Chlamydomonas reinhardtii* J Allmer, B Naumann, C Markert, M Zhang, M Hippler Proteomics 6 (23), 6207-6220, 2006	75	2006
Lithium protects against paraquat neurotoxicity by NRF2 activation and miR-34a inhibition in SH-SY5Y cells B Alural, A Ozerdem, J Allmer, K Genc, S Genc Frontiers in Cellular Neuroscience 9, 209, 2015	71	2015
Computational methods for microRNA target prediction H Hamzeiy, J Allmer, M Yousef miRNomics: MicroRNA Biology and Computational Analysis, 207-221, 2014	65	2014
On the performance of pre-microRNA detection algorithms MDS Demirci, J Baumbach, J Allmer Nature communications 8 (1), 1-9, 2017	63	2017
EPO mediates neurotrophic, neuroprotective, anti-oxidant, and anti-apoptotic effects via downregulation of miR-451 and miR-885-5p in SH-SY5Y neuron-like cells B Alural, GA Duran, KU Tufekci, J Allmer, Z Onkal, D Tunali, K Genc, ... Frontiers in immunology 5, 475, 2014	63	2014
miRNomics: microRNA biology and computational analysis M Yousef, J Allmer Humana Press, 2014	48	2014
Computational methods for ab initio detection of microRNAs J Allmer, M Yousef Frontiers in genetics 3, 209, 2012	47	2012
Computational Prediction of MicroRNAs from Toxoplasma Gondii Potentially Regulating the Hosts’ Gene Expression MD Saçar, C Bağcı, J Allmer Genomics, Proteomics and Bioinformatics 12 (5), 228-238, 2014	46	2014
Machine learning methods for microRNA gene prediction MD Saçar, J Allmer miRNomics: MicroRNA Biology and Computational Analysis, 177-187, 2014	46	2014
Can MiRBase provide positive data for machine learning for the detection of MiRNA hairpins? MD Saçar, H Hamzeiy, J Allmer Journal of integrative bioinformatics 10 (2), 1-11, 2013	46	2013
Genomic simple sequence repeat markers reveal patterns of genetic relatedness and diversity in sesame AÖ Uncu, V Gultekin, J Allmer, A Frary, S Doganlar The Plant Genome 8 (2), plantgenome2014.11.0087, 2015	40	2015
Development of genomic simple sequence repeat markers in opium poppy by next-generation sequencing I Celik, V Gultekin, J Allmer, S Doganlar, A Frary Molecular breeding 34, 323-334, 2014	38	2014
MicroRNA categorization using sequence motifs and k-mers M Yousef, W Khalifa, İE Acar, J Allmer BMC bioinformatics 18, 1-9, 2017	34	2017
One step forward, two steps back; xeno-microRNAs reported in breast milk are artifacts C Bağcı, J Allmer PloS one 11 (1), e0145065, 2016	34	2016
Development of EST-SSR markers for diversity and breeding studies in opium poppy H Selale, I Celik, V Gultekin, J Allmer, S Doganlar, A Frary	34	2013
maTE: discovering expressed interactions between microRNAs and their targets M Yousef, L Abdallah, J Allmer Bioinformatics 35 (20), 4020-4028, 2019	32	2019
Newly developed SSR markers reveal genetic diversity and geographical clustering in spinach (Spinacia oleracea) Ş Göl, M Göktay, J Allmer, S Doğanlar, A Frary Molecular genetics and genomics 292, 847-855, 2017	29	2017

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