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Atul Deshpande
Atul Deshpande
Assistant Professor of Oncology, Johns Hopkins University
Verified email at jhu.edu
Title
Cited by
Cited by
Year
Network inference with Granger causality ensembles on single-cell transcriptomics
A Deshpande, LF Chu, R Stewart, A Gitter
Cell reports 38 (6), 2022
882022
From bench to bedside: Single-cell analysis for cancer immunotherapy
EF Davis-Marcisak, A Deshpande, GL Stein-O’Brien, WJ Ho, D Laheru, ...
Cancer cell 39 (8), 1062-1080, 2021
752021
Sparse dueling bandits
K Jamieson, S Katariya, A Deshpande, R Nowak
Artificial Intelligence and Statistics, 416-424, 2015
682015
Neoadjuvant cabozantinib and nivolumab convert locally advanced hepatocellular carcinoma into resectable disease with enhanced antitumor immunity
WJ Ho, Q Zhu, J Durham, A Popovic, S Xavier, J Leatherman, A Mohan, ...
Nature Cancer 2 (9), 891-903, 2021
562021
Integrating single cell sequencing with a spatial quantitative systems pharmacology model spQSP for personalized prediction of triple-negative breast cancer immunotherapy response
S Zhang, C Gong, A Ruiz-Martinez, H Wang, E Davis-Marcisak, ...
Immunoinformatics 1, 100002, 2021
202021
A general framework for pairs trading with a control-theoretic point of view
A Deshpande, BR Barmish
2016 IEEE Conference on Control Applications (CCA), 761-766, 2016
172016
A substitution-by-interpolation algorithm for watermarking audio
A Deshpande, KMM Prabhu
Signal Processing 89 (2), 218-225, 2009
162009
Spatial transcriptomics analysis of neoadjuvant cabozantinib and nivolumab in advanced hepatocellular carcinoma identifies independent mechanisms of resistance and recurrence
S Zhang, L Yuan, L Danilova, G Mo, Q Zhu, A Deshpande, ATF Bell, ...
Genome medicine 15 (1), 72, 2023
152023
A generalization of the robust positive expectation theorem for stock trading via feedback control
A Deshpande, BR Barmish
2018 European control conference (ECC), 514-520, 2018
152018
Uncovering the spatial landscape of molecular interactions within the tumor microenvironment through latent spaces
A Deshpande, M Loth, DN Sidiropoulos, S Zhang, L Yuan, ATF Bell, ...
Cell systems 14 (4), 285-301. e4, 2023
122023
Community-wide hackathons to identify central themes in single-cell multi-omics
KA Lê Cao, AJ Abadi, EF Davis-Marcisak, L Hsu, A Arora, A Coullomb, ...
Genome biology 22, 1-21, 2021
102021
PanIN and CAF transitions in pancreatic carcinogenesis revealed with spatial data integration
ATF Bell, JT Mitchell, AL Kiemen, K Fujikura, H Fedor, B Gambichler, ...
bioRxiv, 2022.07. 16.500312, 2022
72022
On simultaneous long-short stock trading controllers with cross-coupling
A Deshpande, JA Gubner, BR Barmish
IFAC-PapersOnLine 53 (2), 16989-16995, 2020
72020
Spatial transcriptomics of FFPE pancreatic intraepithelial neoplasias reveals cellular and molecular alterations of progression to pancreatic ductal carcinoma
AT Bell, JT Mitchell, AL Kiemen, K Fujikura, H Fedor, B Gambichler, ...
bioRxiv, 2022
62022
OFDM PAR reduction by substituting original in-band subcarriers after clipping
SS Gunturi, A Deshpande
US Patent 8,848,813, 2014
62014
Informing virtual clinical trials of hepatocellular carcinoma with spatial multi-omics analysis of a human neoadjuvant immunotherapy clinical trial
S Zhang, A Deshpande, BK Verma, H Wang, H Mi, L Yuan, WJ Ho, ...
bioRxiv, 2023
42023
Measurement error covariance in GNSS receiver circuitry, pseudoranges, reference position
A Deshpande, S Ramakrishnan, S Rao
US Patent 9,513,374, 2016
42016
Digitize your Biology! Modeling multicellular systems through interpretable cell behavior
JAI Johnson, GL Stein-O’Brien, M Booth, R Heiland, F Kurtoglu, ...
bioRxiv, 2023
22023
Generating colorblind-friendly scatter plots for single-cell data
T Guha, EJ Fertig, A Deshpande
Elife 11, e82128, 2022
12022
Imaging mass cytometry reveals key spatial features among immune cells in hepatocellular carcinomas treated with neoadjuvant cabozantinib and nivolumab
S Zhang, Q Zhu, N Gross, S Charmsaz, A Deshpande, S Xavier, A Mohan, ...
Cancer Research 81 (13_Supplement), 1682-1682, 2021
12021
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