Pelin Yilmaz
Pelin Yilmaz
Data Science Research Group at IKIM
Verified email at uk-essen.de - Homepage
Title
Cited by
Cited by
Year
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
C Quast, E Pruesse, P Yilmaz, J Gerken, T Schweer, P Yarza, J Peplies, ...
Nucleic acids research 41 (D1), D590-D596, 2012
123172012
Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences
P Yarza, P Yilmaz, E Pruesse, FO Glöckner, W Ludwig, KH Schleifer, ...
Nature Reviews Microbiology 12 (9), 635-645, 2014
14962014
The SILVA and “all-species living tree project (LTP)” taxonomic frameworks
P Yilmaz, LW Parfrey, P Yarza, J Gerken, E Pruesse, C Quast, T Schweer, ...
Nucleic acids research 42 (D1), D643-D648, 2014
14182014
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
RM Bowers, NC Kyrpides, R Stepanauskas, M Harmon-Smith, D Doud, ...
Nature biotechnology 35 (8), 725-731, 2017
6292017
Minimum information about a biosynthetic gene cluster
MH Medema, R Kottmann, P Yilmaz, M Cummings, JB Biggins, K Blin, ...
Nature chemical biology 11 (9), 625-631, 2015
5572015
Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications
P Yilmaz, R Kottmann, D Field, R Knight, JR Cole, L Amaral-Zettler, ...
Nature biotechnology 29 (5), 415-420, 2011
5252011
25 years of serving the community with ribosomal RNA gene reference databases and tools
FO Glöckner, P Yilmaz, C Quast, J Gerken, A Beccati, A Ciuprina, G Bruns, ...
Journal of biotechnology 261, 169-176, 2017
3132017
Minimum information about an uncultivated virus genome (MIUViG)
S Roux, EM Adriaenssens, BE Dutilh, EV Koonin, AM Kropinski, ...
Nature biotechnology 37 (1), 29-37, 2019
1602019
The small unicellular diazotrophic symbiont, UCYN-A, is a key player in the marine nitrogen cycle
C Martinez-Perez, W Mohr, CR Löscher, J Dekaezemacker, S Littmann, ...
Nature Microbiology 1 (11), 1-7, 2016
1212016
Expanding the world of marine bacterial and archaeal clades
P Yilmaz, P Yarza, JZ Rapp, FO Glöckner
Frontiers in microbiology 6, 2016
952016
Phylogeny-aware identification and correction of taxonomically mislabeled sequences
AM Kozlov, J Zhang, P Yilmaz, FO Glöckner, A Stamatakis
Nucleic acids research 44 (11), 5022-5033, 2016
722016
Proposal to reclassify the proteobacterial classes Deltaproteobacteria and Oligoflexia, and the phylum Thermodesulfobacteria into four phyla reflecting major functional …
DW Waite, M Chuvochina, C Pelikan, DH Parks, P Yilmaz, M Wagner, ...
International Journal of Systematic and Evolutionary Microbiology 70 (11 …, 2020
622020
The genomic standards consortium: bringing standards to life for microbial ecology
P Yilmaz, JA Gilbert, R Knight, L Amaral-Zettler, I Karsch-Mizrachi, ...
The ISME journal 5 (10), 1565-1567, 2011
572011
Megx. net: integrated database resource for marine ecological genomics
R Kottmann, I Kostadinov, MB Duhaime, PL Buttigieg, P Yilmaz, ...
Nucleic acids research 38 (suppl_1), D391-D395, 2010
562010
Adaptability as the key to success for the ubiquitous marine nitrite oxidizer Nitrococcus
J Füssel, S Lücker, P Yilmaz, B Nowka, MAHJ van Kessel, P Bourceau, ...
Science advances 3 (11), e1700807, 2017
502017
UniEuk: Time to Speak a Common Language in Protistology!
C Berney, A Ciuprina, S Bender, J Brodie, V Edgcomb, E Kim, J Rajan, ...
Journal of Eukaryotic Microbiology 64 (3), 407-411, 2017
492017
The importance of designating type material for uncultured taxa
M Chuvochina, C Rinke, DH Parks, MS Rappé, GW Tyson, P Yilmaz, ...
Systematic and applied microbiology 42 (1), 15-21, 2019
482019
A phylogenetic framework for the kingdom Fungi based on 18S rRNA gene sequences
P Yarza, P Yilmaz, K Panzer, FO Glöckner, M Reich
Marine genomics 36, 33-39, 2017
46*2017
Identification of habitat-specific biomes of aquatic fungal communities using a comprehensive nearly full-length 18S rRNA dataset enriched with contextual data
K Panzer, P Yilmaz, M Weiß, L Reich, M Richter, J Wiese, ...
PLoS One 10 (7), e0134377, 2015
452015
The global genome biodiversity network (GGBN) data standard specification
G Droege, K Barker, O Seberg, J Coddington, E Benson, WG Berendsohn, ...
Database 2016, 2016
382016
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Articles 1–20