Oliver Stegle

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Karsten BorgwardtDirector, Max Planck Institute of BiochemistryVerified email at biochem.mpg.de
John MarioniEMBL-EBIVerified email at ebi.ac.uk
Wolf ReikHead, Epigenetics Programme, Babraham Institute Cambridge, UKVerified email at babraham.ac.uk
Sarah A. TeichmannWellcome Sanger Institute & University of CambridgeVerified email at cam.ac.uk
Christoph LippertProfessor, Hasso Plattner Institute, Universität PotsdamVerified email at hpi.de
Francesco Paolo CasaleHelmholtz Pioneer Campus, Institute of AI for Health, Helmholtz Zentrum MünchenVerified email at helmholtz-muenchen.de
Gunnar RätschProfessor, ETH ZürichVerified email at inf.ethz.ch
Marc Jan BonderPostdoc & Team-leader, DKFZVerified email at dkfz.de
Leopold PartsFaculty at Wellcome Sanger Institute; Senior Researcher (part-time) at University of TartuVerified email at sanger.ac.uk
Richard DurbinDept of Genetics, University of CambridgeVerified email at cam.ac.uk
Detlef WeigelMax Planck Institute for Biology TübingenVerified email at weigelworld.org
Ricard ArgelaguetAltos LabsVerified email at altoslabs.com
John WinnPrincipal Researcher, Machine Learning Group, Microsoft Research CambridgeVerified email at microsoft.com
Stephen ClarkBabraham InstituteVerified email at babraham.ac.uk
Neil D. LawrenceUniversity of CambridgeVerified email at cl.cam.ac.uk
Richard MottWeldon Professor of Computational Genetics, University College London, UKVerified email at ucl.ac.uk
Bernhard SchölkopfDirector, Max Planck Institute for Intelligent Systems & ELLIS Institute Tübingen; Professor at ETHVerified email at tuebingen.mpg.de
Magnus NordborgGregor Mendel Institute, Austrian Academy of SciencesVerified email at gmi.oeaw.ac.at
Ewan BirneyDirector, EMBL-EBIVerified email at ebi.ac.uk
David MacKayProfessor of Natural Philosophy, Cavendish Laboratory, University of CambridgeVerified email at mrao.cam.ac.uk

Oliver Stegle

German Cancer Research Center (DKFZ) & EMBL Heidelberg

Verified email at dkfz.de - Homepage

Systems Genetics Single-cell genomics Computational Biology Statistical Genomics


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A global reference for human genetic variation 1000 Genomes Project Consortium Nature 526 (7571), 68, 2015	13191	2015
An integrated map of structural variation in 2,504 human genomes PH Sudmant, T Rausch, EJ Gardner, RE Handsaker, A Abyzov, ... Nature 526 (7571), 75-81, 2015	2188	2015
Transcriptome and genome sequencing uncovers functional variation in humans T Lappalainen, M Sammeth, MR Friedländer, PAC ‘t Hoen, J Monlong, ... Nature 501 (7468), 506-511, 2013	1942	2013
The human cell atlas A Regev, SA Teichmann, ES Lander, I Amit, C Benoist, E Birney, ... elife 6, e27041, 2017	1774	2017
Deep learning for computational biology C Angermueller, T Pärnamaa, L Parts, O Stegle Molecular systems biology 12 (7), 878, 2016	1360	2016
Pan-cancer analysis of whole genomes Nature 578 (7793), 82-93, 2020	1269	2020
Computational and analytical challenges in single-cell transcriptomics O Stegle, SA Teichmann, JC Marioni Nature Reviews Genetics 16 (3), 133-145, 2015	1163	2015
Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells F Buettner, KN Natarajan, FP Casale, V Proserpio, A Scialdone, FJ Theis, ... Nature biotechnology 33 (2), 155-160, 2015	1149	2015
Severe COVID-19 is marked by a dysregulated myeloid cell compartment J Schulte-Schrepping, N Reusch, D Paclik, K Baßler, S Schlickeiser, ... Cell 182 (6), 1419-1440. e23, 2020	1117	2020
Whole-genome sequencing of multiple Arabidopsis thaliana populations J Cao, K Schneeberger, S Ossowski, T Günther, S Bender, J Fitz, ... Nature Genetics 43 (10), 956-963, 2011	1050	2011
Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity SA Smallwood, HJ Lee, C Angermueller, F Krueger, H Saadeh, J Peat, ... Nature methods 11 (8), 817-820, 2014	1033	2014
Large-scale cis- and trans-eQTL analyses identify thousands of genetic loci and polygenic scores that regulate blood gene expression U Võsa, A Claringbould, HJ Westra, MJ Bonder, P Deelen, B Zeng, ... Nature genetics 53 (9), 1300-1310, 2021	907*	2021
Lineage-specific genome architecture links enhancers and non-coding disease variants to target gene promoters BM Javierre, OS Burren, SP Wilder, R Kreuzhuber, SM Hill, S Sewitz, ... Cell 167 (5), 1369-1384. e19, 2016	898	2016
Using probabilistic estimation of expression residuals (PEER) to obtain increased power and interpretability of gene expression analyses O Stegle, L Parts, M Piipari, J Winn, R Durbin Nature protocols 7 (3), 500-507, 2012	855	2012
A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium. SMIII Consortium Nature Biotechnology 32 (9), 903-914, 2014	799	2014
Eleven grand challenges in single-cell data science D Lähnemann, J Köster, E Szczurek, DJ McCarthy, SC Hicks, ... Genome biology 21 (1), 1-35, 2020	784	2020
Spontaneous epigenetic variation in the Arabidopsis thaliana methylome C Becker, J Hagmann, J Müller, D Koenig, O Stegle, K Borgwardt, ... Nature 480 (7376), 245-249, 2011	724	2011
Multiple reference genomes and transcriptomes for Arabidopsis thaliana X Gan, O Stegle, J Behr, JG Steffen, P Drewe, KL Hildebrand, R Lyngsoe, ... Nature 477 (7365), 419-423, 2011	721	2011
Multi‐Omics Factor Analysis—a framework for unsupervised integration of multi‐omics data sets R Argelaguet, B Velten, D Arnol, S Dietrich, T Zenz, JC Marioni, F Buettner, ... Molecular systems biology 14 (6), e8124, 2018	689	2018
Parallel single-cell sequencing links transcriptional and epigenetic heterogeneity C Angermueller, SJ Clark, HJ Lee, IC Macaulay, MJ Teng, TX Hu, ... Nature methods 13 (3), 229-232, 2016	660	2016

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