| The complete sequence of a human genome S Nurk, S Koren, A Rhie, M Rautiainen, AV Bzikadze, A Mikheenko, ... Science 376 (6588), 44-53, 2022 | 2207 | 2022 |
| Highly evolvable malaria vectors: The genomes of 16 Anopheles mosquitoes DE Neafsey, RM Waterhouse, MR Abai, SS Aganezov, MA Alekseyev, ... Science 347 (6217), 1258522, 2015 | 611 | 2015 |
| Major impacts of widespread structural variation on gene expression and crop improvement in tomato M Alonge, X Wang, M Benoit, S Soyk, L Pereira, L Zhang, H Suresh, ... Cell 182 (1), 145-161. e23, 2020 | 583 | 2020 |
| Complete genomic and epigenetic maps of human centromeres N Altemose, GA Logsdon, AV Bzikadze, P Sidhwani, SA Langley, ... Science 376 (6588), eabl4178, 2022 | 319 | 2022 |
| Automated assembly scaffolding using RagTag elevates a new tomato system for high-throughput genome editing M Alonge, L Lebeigle, M Kirsche, K Jenike, S Ou, S Aganezov, X Wang, ... Genome biology 23 (1), 258, 2022 | 266 | 2022 |
| A complete reference genome improves analysis of human genetic variation S Aganezov, SM Yan, DC Soto, M Kirsche, S Zarate, P Avdeyev, ... Science 376 (6588), eabl3533, 2022 | 260 | 2022 |
| Benchmarking challenging small variants with linked and long reads J Wagner, ND Olson, L Harris, Z Khan, J Farek, M Mahmoud, A Stankovic, ... Cell genomics 2 (5), 2022 | 131 | 2022 |
| Comprehensive analysis of structural variants in breast cancer genomes using single-molecule sequencing S Aganezov, S Goodwin, RM Sherman, FJ Sedlazeck, G Arun, S Bhatia, ... Genome research 30 (9), 1258-1273, 2020 | 96 | 2020 |
| Automated assembly scaffolding elevates a new tomato system for high-throughput genome editing M Alonge, L Lebeigle, M Kirsche, S Aganezov, X Wang, ZB Lippman, ... BioRxiv, 2021.11. 18.469135, 2021 | 91 | 2021 |
| Reconstruction of ancestral genomes in presence of gene gain and loss P Avdeyev, S Jiang, S Aganezov, F Hu, MA Alekseyev Journal of Computational Biology 23 (3), 150-164, 2016 | 76 | 2016 |
| A diploid assembly-based benchmark for variants in the major histocompatibility complex CS Chin, J Wagner, Q Zeng, E Garrison, S Garg, A Fungtammasan, ... Nature communications 11 (1), 4794, 2020 | 62 | 2020 |
| Jasmine and Iris: population-scale structural variant comparison and analysis M Kirsche, G Prabhu, R Sherman, B Ni, A Battle, S Aganezov, MC Schatz Nature methods 20 (3), 408-417, 2023 | 50 | 2023 |
| Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome assemblies RM Waterhouse, S Aganezov, Y Anselmetti, J Lee, L Ruzzante, ... BMC Biology 18 (1), 1, 2020 | 38 | 2020 |
| Jasmine: Population-scale structural variant comparison and analysis M Kirsche, G Prabhu, R Sherman, B Ni, S Aganezov, MC Schatz BioRxiv, 2021.05. 27.445886, 2021 | 26 | 2021 |
| The EN-TEx resource of multi-tissue personal epigenomes & variant-impact models J Rozowsky, J Gao, B Borsari, YT Yang, T Galeev, G Gürsoy, CB Epstein, ... Cell 186 (7), 1493-1511. e40, 2023 | 25 | 2023 |
| The human origin recognition complex is essential for pre-RC assembly, mitosis, and maintenance of nuclear structure HC Chou, K Bhalla, OEL Demerdesh, O Klingbeil, K Hanington, ... Elife 10, e61797, 2021 | 22 | 2021 |
| Scaffold assembly based on genome rearrangement analysis S Aganezov, N Sitdykova, MA Alekseyev, AGC Consortium Computational biology and chemistry 57, 46-53, 2015 | 20 | 2015 |
| Reconstruction of clone-and haplotype-specific cancer genome karyotypes from bulk tumor samples S Aganezov, BJ Raphael Genome research 30 (9), 1274-1290, 2020 | 19 | 2020 |
| CAMSA: a tool for comparative analysis and merging of scaffold assemblies SS Aganezov, MA Alekseyev BMC bioinformatics 18, 41-50, 2017 | 11 | 2017 |
| Multi-genome scaffold co-assembly based on the analysis of gene orders and genomic repeats S Aganezov, MA Alekseyev International Symposium on Bioinformatics Research and Applications, 237-249, 2016 | 11 | 2016 |
Michael C. SchatzBloomberg Distinguished Professor, Johns Hopkins UniversityVerified email at cs.jhu.edu
