Igor Mandric
Igor Mandric
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Cited by
QUENTIN: reconstruction of disease transmissions from viral quasispecies genomic data
P Skums, A Zelikovsky, R Singh, W Gussler, Z Dimitrova, S Knyazev, ...
Bioinformatics 34 (1), 163-170, 2018
Profiling immunoglobulin repertoires across multiple human tissues using RNA sequencing
I Mandric, J Rotman, HT Yang, N Strauli, DJ Montoya, W Van Der Wey, ...
Nature communications 11 (1), 3126, 2020
ScaffMatch: scaffolding algorithm based on maximum weight matching
I Mandric, A Zelikovsky
Bioinformatics 31 (16), 2632-2638, 2015
Optimized design of single-cell RNA sequencing experiments for cell-type-specific eQTL analysis
I Mandric, T Schwarz, A Majumdar, K Hou, L Briscoe, R Perez, ...
Nature communications 11 (1), 5504, 2020
Fast bootstrapping-based estimation of confidence intervals of expression levels and differential expression from RNA-Seq data
I Mandric, Y Temate-Tiagueu, T Shcheglova, S Al Seesi, A Zelikovsky, ...
Bioinformatics 33 (20), 3302-3304, 2017
Benchmarking of computational error-correction methods for next-generation sequencing data
K Mitchell, JJ Brito, I Mandric, Q Wu, S Knyazev, S Chang, LS Martin, ...
Genome biology 21, 1-13, 2020
MiCoP: microbial community profiling method for detecting viral and fungal organisms in metagenomic samples
N LaPierre, S Mangul, M Alser, I Mandric, NC Wu, D Koslicki, E Eskin
BMC genomics 20, 1-10, 2019
Rrp6 moonlights in an RNA exosome-independent manner to promote cell survival and gene expression during stress
C Wang, Y Liu, SM DeMario, I Mandric, C Gonzalez-Figueroa, ...
Cell reports 31 (10), 2020
Inferring metabolic pathway activity levels from RNA-Seq data
Y Temate-Tiagueu, SA Seesi, M Mathew, I Mandric, A Rodriguez, K Bean, ...
BMC genomics 17, 493-503, 2016
Repeat-aware evaluation of scaffolding tools
I Mandric, S Knyazev, A Zelikovsky
Bioinformatics 34 (15), 2530-2537, 2018
Single cell transcriptomic analyses reveal the impact of bHLH factors on human retinal organoid development
X Zhang, I Mandric, KH Nguyen, TTT Nguyen, M Pellegrini, JCR Grove, ...
Frontiers in Cell and Developmental Biology 9, 653305, 2021
Scaffolding algorithms
I Mandric, J Lindsay, II Măndoiu, A Zelikovsky
Computational Methods for Next Generation Sequencing Data Analysis, 105-131, 2016
In vitro atlas of dorsal spinal interneurons reveals Wnt signaling as a critical regulator of progenitor expansion
S Gupta, R Kawaguchi, E Heinrichs, S Gallardo, S Castellanos, I Mandric, ...
Cell reports 40 (3), 2022
Profiling adaptive immune repertoires across multiple human tissues by RNA Sequencing
S Mangul, M Igor, H Taegyun Yang, N Strauli, D Montoya, J Rotman, ...
bioRxiv, 089235, 2016
Comparative transcriptome analysis of Peromyscus leucopus and C3H mice infected with the Lyme disease pathogen
AM Gaber, I Mandric, C Nitirahardjo, H Piontkivska, AE Hillhouse, ...
Frontiers in Cellular and Infection Microbiology 13, 1115350, 2023
BATMAN: fast and accurate integration of single-cell RNA-seq datasets via minimum-weight matching
I Mandric, BL Hill, MK Freund, M Thompson, E Halperin
IScience 23 (6), 2020
Metabolic analysis of metatranscriptomic data from planktonic communities
I Mandric, S Knyazev, C Padilla, F Stewart, II Măndoiu, A Zelikovsky
Bioinformatics Research and Applications: 13th International Symposium …, 2017
Pipeline for analyzing activity of metabolic pathways in planktonic communities using metatranscriptomic data
FM Rondel, R Hosseini, B Sahoo, S Knyazev, I Mandric, F Stewart, ...
Journal of Computational Biology 28 (8), 842-855, 2021
Silp3: Maximum likelihood approach to scaffolding
I Mandric, J Lindsay, I Măndoiu, A Zelikovsky
2014 IEEE 4th International Conference on Computational Advances in Bio and …, 2014
Solving scaffolding problem with repeats
I Mandric, A Zelikovsky
bioRxiv, 330472, 2018
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