Paola Bonizzoni

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Gianluca Della VedovaUniversità degli Studi di Milano-BicoccaVerified email at dellavedova.org
Riccardo DondiUniversità degli studi di BergamoVerified email at unibg.it
Raffaella RizziRicercatore confermato in Informatica, Università degli Studi di Milano-BicoccaVerified email at disco.unimib.it
Yuri PirolaAssistant professor at DISCo, Univ. of Milano-BicoccaVerified email at unimib.it
Giancarlo MauriProfessor of Computer Science - University of Milano-BicoccaVerified email at disco.unimib.it
Rosalba ZizzaRicercatore INF/01, Univ. di SalernoVerified email at dia.unisa.it
Clelia De FeliceProfessor of Computer Science, University of SalernoVerified email at dia.unisa.it
Marco PrevitaliPostDoc, Università degli studi di Milano-BicoccaVerified email at unimib.it
Stefano BerettaSan Raffaele Telethon Institute for Gene TherapyVerified email at hsr.it
Graziano PesoleProfessor of Molecular Biology, Università degli Studi di Bari and National Research CouncilVerified email at uniba.it
Simone CiccolellaUniversity of Study Milano-BicoccaVerified email at unimib.it
Picardi ErnestoFull Professor of Molecular BiologyVerified email at uniba.it
Murray PattersonAssistant Professor, Georgia State UniversityVerified email at cs.gsu.edu
Nadia PisantiUniversity of Pisa & Erable Team INRIAVerified email at di.unipi.it
Gunnar W. KlauHeinrich Heine University DüsseldorfVerified email at hhu.de
Gabriella TruccoAssistant Professor, Università degli Studi di MilanoVerified email at unimi.it
Simone ZaccariaGroup Leader, University College London, Cancer InstituteVerified email at ucl.ac.uk
Tao JiangUC RiversideVerified email at cs.ucr.edu
Claudio FerrettiAssociated Professor of Computer Science, Milano-Bicocca UniversityVerified email at disco.unimib.it
Anna Paola CarrieriManager & Research Scientist at IBM ResearchVerified email at uk.ibm.com

Paola Bonizzoni

University of Milano Bicocca

Verified email at unimib.it

Computer science Bioinformatics


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
The complexity of multiple sequence alignment with SP-score that is a metric P Bonizzoni, G Della Vedova Theoretical Computer Science 259 (1-2), 63-79, 2001	172	2001
The haplotyping problem: an overview of computational models and solutions P Bonizzoni, G Della Vedova, R Dondi, J Li Journal of Computer Science and Technology 18 (6), 675-688, 2003	156	2003
Reconciling a gene tree to a species tree under the duplication cost model P Bonizzoni, G Della Vedova, R Dondi Theoretical computer science 347 (1-2), 36-53, 2005	91	2005
ASPicDB: a database resource for alternative splicing analysis T Castrignanò, M D’Antonio, A Anselmo, D Carrabino, A D’Onorio De Meo, ... Bioinformatics 24 (10), 1300-1304, 2008	56	2008
ASPIC: a novel method to predict the exon-intron structure of a gene that is optimally compatible to a set of transcript sequences P Bonizzoni, R Rizzi, G Pesole BMC bioinformatics 6 (1), 1-16, 2005	50	2005
Experimenting an approximation algorithm for the LCS P Bonizzoni, G Della Vedova, G Mauri Discrete Applied Mathematics 110 (1), 13-24, 2001	50	2001
HapCol: accurate and memory-efficient haplotype assembly from long reads Y Pirola, S Zaccaria, R Dondi, GW Klau, N Pisanti, P Bonizzoni Bioinformatics 32 (11), 1610-1617, 2016	49	2016
ASPicDB: a database of annotated transcript and protein variants generated by alternative splicing PL Martelli, M D’Antonio, P Bonizzoni, T Castrignano, AM D’Erchia, ... Nucleic acids research 39 (suppl_1), D80-D85, 2010	44	2010
On the approximation of correlation clustering and consensus clustering P Bonizzoni, G Della Vedova, R Dondi, T Jiang Journal of Computer and System Sciences 74 (5), 671-696, 2008	43	2008
Exemplar longest common subsequence P Bonizzoni, G Della Vedova, R Dondi, G Fertin, R Rizzi, S Vialette IEEE/ACM Transactions on Computational Biology and Bioinformatics 4 (4), 535-543, 2007	43	2007
Variants of constrained longest common subsequence P Bonizzoni, G Della Vedova, R Dondi, Y Pirola Information Processing Letters 110 (20), 877-881, 2010	40	2010
Separating some splicing models P Bonizzoni, C Ferretti, G Mauri, R Zizza Information Processing Letters 79 (6), 255-259, 2001	39	2001
An approximation algorithm for the shortest common supersequence problem: an experimental analysis P Barone, P Bonizzoni, GD Vedova, G Mauri Proceedings of the 2001 ACM symposium on applied computing, 56-60, 2001	38	2001
ASPIC: a web resource for alternative splicing prediction and transcript isoforms characterization T Castrignano, R Rizzi, IG Talamo, PDO De Meo, A Anselmo, P Bonizzoni, ... Nucleic Acids Research 34 (suppl_2), W440-W443, 2006	35	2006
The binary perfect phylogeny with persistent characters P Bonizzoni, C Braghin, R Dondi, G Trucco Theoretical computer science 454, 51-63, 2012	33	2012
Computational methods for alternative splicing prediction. P Bonizzoni, R Rizzi, G Pesole Briefings in functional genomics & proteomics 5 (1), 2006	31	2006
ASGAL: aligning RNA-Seq data to a splicing graph to detect novel alternative splicing events L Denti, R Rizzi, S Beretta, GD Vedova, M Previtali, P Bonizzoni BMC bioinformatics 19 (1), 1-21, 2018	30	2018
Inferring cancer progression from single-cell sequencing while allowing mutation losses S Ciccolella, C Ricketts, M Soto Gomez, M Patterson, D Silverbush, ... Bioinformatics 37 (3), 326-333, 2021	29	2021
On the minimum error correction problem for haplotype assembly in diploid and polyploid genomes P Bonizzoni, R Dondi, GW Klau, Y Pirola, N Pisanti, S Zaccaria Journal of Computational Biology 23 (9), 718-736, 2016	29	2016
About infinite traces P Bonizzoni, G Mauri, G Pighizzini Università di Milano. Dipartimento di Scienze dell'Informazione, 1990	29	1990

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