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Jennifer Franks
Jennifer Franks
Postdoctoral Research Fellow, Department of Genome Sciences at University of Washington
Подтвержден адрес электронной почты в домене uw.edu - Главная страница
Название
Процитировано
Процитировано
Год
Abatacept in early diffuse cutaneous systemic sclerosis: results of a phase II investigator‐initiated, multicenter, double‐blind, randomized, placebo‐controlled trial
D Khanna, C Spino, S Johnson, L Chung, ML Whitfield, CP Denton, ...
Arthritis & rheumatology 72 (1), 125-136, 2020
1912020
Embryo-scale, single-cell spatial transcriptomics
SR Srivatsan, MC Regier, E Barkan, JM Franks, JS Packer, P Grosjean, ...
Science 373 (6550), 111-117, 2021
1622021
Global skin gene expression analysis of early diffuse cutaneous systemic sclerosis shows a prominent innate and adaptive inflammatory profile
B Skaug, D Khanna, WR Swindell, ME Hinchcliff, TM Frech, VD Steen, ...
Annals of the rheumatic diseases 79 (3), 379-386, 2020
1242020
Belimumab for the treatment of early diffuse systemic sclerosis: results of a randomized, double‐blind, placebo‐controlled, pilot trial
JK Gordon, V Martyanov, JM Franks, EJ Bernstein, J Szymonifka, C Magro, ...
Arthritis & rheumatology 70 (2), 308-316, 2018
1242018
A Machine Learning Classifier for Assigning Individual Patients with Systemic Sclerosis to Intrinsic Molecular Subsets
JM Franks, V Martyanov, G Cai, Y Wang, Z Li, TA Wood, ML Whitfield
Arthritis & Rheumatology, 2019
682019
Feature specific quantile normalization enables cross-platform classification of molecular subtypes using gene expression data
JM Franks, G Cai, ML Whitfield
Bioinformatics 34 (11), 1868-1874, 2018
642018
Mycophenolate mofetil treatment of systemic sclerosis reduces myeloid cell numbers and attenuates the inflammatory gene signature in skin
M Hinchcliff, DM Toledo, JN Taroni, TA Wood, JM Franks, MS Ball, ...
Journal of Investigative Dermatology 138 (6), 1301-1310, 2018
602018
Machine learning predicts stem cell transplant response in severe scleroderma
JM Franks, V Martyanov, Y Wang, TA Wood, A Pinckney, LJ Crofford, ...
Annals of the rheumatic diseases 79 (12), 1608-1615, 2020
42*2020
Microbiome dysbiosis is associated with disease duration and increased inflammatory gene expression in systemic sclerosis skin
ME Johnson, JM Franks, G Cai, BK Mehta, TA Wood, K Archambault, ...
Arthritis research & therapy 21, 1-11, 2019
292019
Machine learning integration of scleroderma histology and gene expression identifies fibroblast polarisation as a hallmark of clinical severity and improvement
K Showalter, R Spiera, C Magro, P Agius, V Martyanov, JM Franks, ...
Annals of the rheumatic diseases 80 (2), 228-237, 2021
242021
BioMethyl: an R package for biological interpretation of DNA methylation data
Y Wang, JM Franks, ML Whitfield, C Cheng
Bioinformatics 35 (19), 3635-3641, 2019
222019
A genomic meta-analysis of clinical variables and their association with intrinsic molecular subsets in systemic sclerosis
JM Franks, DM Toledo, V Martyanov, Y Wang, S Huang, TA Wood, ...
Rheumatology 62 (1), 19-28, 2023
62023
Single-cell analysis of chromatin and expression reveals age-and sex-associated alterations in the human heart
DF Read, G Booth, RM Daza, DL Jackson, RG Gladden, SR Srivatsan, ...
BioRxiv, 2022.07. 12.496461, 2022
62022
Regulator combinations identify systemic sclerosis patients with more severe disease
Y Wang, JM Franks, M Yang, DM Toledo, TA Wood, M Hinchcliff, ...
JCI insight 5 (17), 2020
52020
Clinical and molecular findings after autologous stem cell transplantation or cyclophosphamide for scleroderma: handling missing longitudinal data
L Keyes‐Elstein, A Pinckney, E Goldmuntz, B Welch, JM Franks, ...
Arthritis Care & Research 75 (2), 307-316, 2023
42023
Belimumab for the treatment of early diffuse systemic sclerosis: results of a randomized, double-blind, placebocontrolled, pilot trial. Arthritis Rheumatol (Hoboken, NJ). 2018 …
JK Gordon, V Martyanov, JM Franks, EJ Bernstein, J Szymonifka, C Magro
4
Pulmonary osteoclast-like cells in silica induced pulmonary fibrosis
Y Hasegawa, JM Franks, Y Tanaka, Y Uehara, DF Read, C Williams, ...
bioRxiv, 2023
22023
Machine-learning classification identifies early systemic sclerosis patients that improve with abatacept treatment by modulating CD28-pathways
BK Mehta, ME Espinoza, JM Franks, Y Yuan, Y Wang, T Wood, ...
JCI Insight 7 (24), e155282, 2022
22022
Abatacept in early diffuse cutaneous systemic sclerosis: results of a Phase II investigator-initiated, multicenter, double-blind, randomized. placebo-controlled trial …
D Khanna, C Spino, S Johnson, L Chung, ML Whitfield, CP Denton, ...
22020
Machine-learning classification identifies patients with early systemic sclerosis as abatacept responders via CD28 pathway modulation
BK Mehta, ME Espinoza, JM Franks, Y Yuan, Y Wang, T Wood, ...
JCI insight 7 (24), 2022
12022
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Статьи 1–20