Effects of pH and salt concentration on stability of a protein G variant using coarse-grained models VM de Oliveira, V de Godoi Contessoto, FB da Silva, DLZ Caetano, ... Biophysical Journal 114 (1), 65-75, 2018 | 40 | 2018 |
AlphaKnot: server to analyze entanglement in structures predicted by AlphaFold methods W Niemyska, P Rubach, BA Gren, ML Nguyen, W Garstka, ... Nucleic Acids Research 50 (W1), W44-W50, 2022 | 16 | 2022 |
Non-native cooperative interactions modulate protein folding rates F Bruno da Silva, VG Contessoto, VM De Oliveira, J Clarke, VBP Leite The Journal of Physical Chemistry B 122 (48), 10817-10824, 2018 | 16 | 2018 |
Improving the Thermostability of Xylanase A from Bacillus subtilis by Combining Bioinformatics and Electrostatic Interactions Optimization K Ngo, F Bruno da Silva, VBP Leite, VG Contessoto, JN Onuchic The Journal of Physical Chemistry B 125 (17), 4359-4367, 2021 | 10 | 2021 |
Rational design of chymotrypsin inhibitor 2 by optimizing non-native interactions F B. da Silva, V M. de Oliveira, MN Sanches, VG Contessoto, VBP Leite Journal of chemical information and modeling 60 (2), 982-988, 2019 | 10 | 2019 |
pH and the breast cancer recurrent mutation D538G affect the process of activation of estrogen receptor α VM De Oliveira, MMG Dias, TM Avelino, NB Videira, FB Da Silva, ... Biochemistry 61 (6), 455-463, 2022 | 7 | 2022 |
pH and charged mutations modulate cold shock protein folding and stability: A constant pH monte carlo study VM De Oliveira, DLZ Caetano, FB Da Silva, PR Mouro, AB de Oliveira Jr, ... Journal of Chemical Theory and Computation 16 (1), 765-772, 2019 | 7 | 2019 |
First crystal structure of double knotted protein TrmD-Tm1570–inside from degradation perspective FB da Silva, I Lewandowska, A Kluza, S Niewieczerzal, R Augustyniak, ... bioRxiv, 2023.03. 13.532328, 2023 | 5 | 2023 |
Probing the Energy Landscape of Spectrin R15 and R16 and the Effects of Non-native Interactions FB da Silva, V Martins de Oliveira, AB de Oliveira Junior, VG Contessoto, ... The Journal of Physical Chemistry B 127 (6), 1291-1300, 2023 | 4 | 2023 |
Exploring the folding landscape of leptin: Insights into threading pathways FB da Silva, JM Simien, RG Viegas, E Haglund, VBP Leite Journal of Structural Biology 216 (1), 108054, 2024 | 3 | 2024 |
Non-native Interactions Explain the Folding Rate Differences in α-Spectrin Domains and the Origin of Internal Friction Effects FB da Silva, VG Contessoto, VM de Oliveira, J Clarke, VBP Leite bioRxiv, 232116, 2017 | 2 | 2017 |
Knots and θ-Curves Identification in Polymeric Chains and Native Proteins Using Neural Networks F Bruno da Silva, B Gabrovšek, M Korpacz, K Luczkiewicz, ... Macromolecules, 2024 | | 2024 |
Processing of Composite Electrodes of Carbon Nanotube Fabrics and Inorganic Matrices via Rapid Joule Heating FB da Silva, VM de Oliveira, AB de Oliveira Junior, VG Contessoto, ... Journal of Physical Chemistry B, 10, 2023 | | 2023 |
Compreendendo a cinética de enovelamento da α–espectrina por meio de interações não nativas FB Silva Universidade Estadual Paulista (Unesp), 2017 | | 2017 |
Protein Folding at Constant pH: Salt Concentration and pH Changing Protein Stability VG Contessoto, VM de Oliveira, FB da Silva, DL Zago | | |