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Vadim I. Nazarov
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VDJtools: unifying post-analysis of T cell receptor repertoires
M Shugay, DV Bagaev, MA Turchaninova, DA Bolotin, OV Britanova, ...
PLoS computational biology 11 (11), e1004503, 2015
5502015
tcR: an R package for T cell receptor repertoire advanced data analysis
VI Nazarov, MV Pogorelyy, EA Komech, IV Zvyagin, DA Bolotin, M Shugay, ...
BMC bioinformatics 16, 1-5, 2015
2432015
Immunarch: Bioinformatics analysis of T-Cell and B-Cell immune repertoires.(2022)
V Nazarov, V Tsvetkov, E Rumynskiy, A Popov, I Balashov, M Samokhina
129*
Persisting fetal clonotypes influence the structure and overlap of adult human T cell receptor repertoires
MV Pogorelyy, Y Elhanati, Q Marcou, AL Sycheva, EA Komech, ...
PLoS computational biology 13 (7), e1005572, 2017
982017
The evidence for increased L1 activity in the site of human adult brain neurogenesis
AA Kurnosov, SV Ustyugova, VI Nazarov, AA Minervina, AY Komkov, ...
PLoS One 10 (2), e0117854, 2015
602015
Expression-based subtypes define pathologic response to neoadjuvant immune-checkpoint inhibitors in muscle-invasive bladder cancer
AG Robertson, K Meghani, LF Cooley, KA McLaughlin, LA Fall, Y Yu, ...
Nature communications 14 (1), 2126, 2023
152023
Soft edit distance for differentiable comparison of symbolic sequences
E Ofitserov, V Tsvetkov, V Nazarov
arXiv preprint arXiv:1904.12562, 2019
112019
Reliability of immune receptor rearrangements as genetic markers for minimal residual disease monitoring
VI Nazarov, AA Minervina, AY Komkov, MV Pogorelyy, MA Maschan, ...
Bone Marrow Transplantation 51 (10), 1408-1410, 2016
92016
Proceedings of the Frontiers of Retrovirology Conference 2016
I Zurnic, S Hütter, U Lehmann, N Stanke, J Reh, T Kern, F Lindel, ...
Retrovirology 13, 1-40, 2016
12016
Convolutional architecture for prediction of peptide-MHC binding affinities
R Layko, V Nazarov, M Shugay
Moscow Conference on Computational Molecular Biology (MCCMB 2017), 127-127, 2017
2017
Deep learning model for prediction of probability for thymic selection for T-cell receptor sequences
S Tolstoukhova, E Ofitserov, M Izraelson, V Nazarov
Moscow Conference on Computational Molecular Biology (MCCMB 2017), 131-131, 2017
2017
Graph-based data structure for enumeration of all possible generation scenarios of immune receptor sequences
VI Nazarov, ES Klyshinsky
Keldysh Institute Preprints, 1-30, 2017
2017
Normalisation based method for deep sequencing of somatic retroelement integrations in human genome
A Komkov, A Minervina, G Nugmanov, V Nazarov, K Khodosevich, ...
RETROVIROLOGY 13, 2016
2016
A novel normalization based approach for somatic Alu insertions identification in human brain cells
AA Minervina, A Komkov, A Kurnosov, V Nazarov, M Pogorelyy, ...
FEBS JOURNAL 282, 170-171, 2015
2015
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