VDJtools: unifying post-analysis of T cell receptor repertoires M Shugay, DV Bagaev, MA Turchaninova, DA Bolotin, OV Britanova, ... PLoS computational biology 11 (11), e1004503, 2015 | 550 | 2015 |
tcR: an R package for T cell receptor repertoire advanced data analysis VI Nazarov, MV Pogorelyy, EA Komech, IV Zvyagin, DA Bolotin, M Shugay, ... BMC bioinformatics 16, 1-5, 2015 | 243 | 2015 |
Immunarch: Bioinformatics analysis of T-Cell and B-Cell immune repertoires.(2022) V Nazarov, V Tsvetkov, E Rumynskiy, A Popov, I Balashov, M Samokhina | 129* | |
Persisting fetal clonotypes influence the structure and overlap of adult human T cell receptor repertoires MV Pogorelyy, Y Elhanati, Q Marcou, AL Sycheva, EA Komech, ... PLoS computational biology 13 (7), e1005572, 2017 | 98 | 2017 |
The evidence for increased L1 activity in the site of human adult brain neurogenesis AA Kurnosov, SV Ustyugova, VI Nazarov, AA Minervina, AY Komkov, ... PLoS One 10 (2), e0117854, 2015 | 60 | 2015 |
Expression-based subtypes define pathologic response to neoadjuvant immune-checkpoint inhibitors in muscle-invasive bladder cancer AG Robertson, K Meghani, LF Cooley, KA McLaughlin, LA Fall, Y Yu, ... Nature communications 14 (1), 2126, 2023 | 15 | 2023 |
Soft edit distance for differentiable comparison of symbolic sequences E Ofitserov, V Tsvetkov, V Nazarov arXiv preprint arXiv:1904.12562, 2019 | 11 | 2019 |
Reliability of immune receptor rearrangements as genetic markers for minimal residual disease monitoring VI Nazarov, AA Minervina, AY Komkov, MV Pogorelyy, MA Maschan, ... Bone Marrow Transplantation 51 (10), 1408-1410, 2016 | 9 | 2016 |
Proceedings of the Frontiers of Retrovirology Conference 2016 I Zurnic, S Hütter, U Lehmann, N Stanke, J Reh, T Kern, F Lindel, ... Retrovirology 13, 1-40, 2016 | 1 | 2016 |
Convolutional architecture for prediction of peptide-MHC binding affinities R Layko, V Nazarov, M Shugay Moscow Conference on Computational Molecular Biology (MCCMB 2017), 127-127, 2017 | | 2017 |
Deep learning model for prediction of probability for thymic selection for T-cell receptor sequences S Tolstoukhova, E Ofitserov, M Izraelson, V Nazarov Moscow Conference on Computational Molecular Biology (MCCMB 2017), 131-131, 2017 | | 2017 |
Graph-based data structure for enumeration of all possible generation scenarios of immune receptor sequences VI Nazarov, ES Klyshinsky Keldysh Institute Preprints, 1-30, 2017 | | 2017 |
Normalisation based method for deep sequencing of somatic retroelement integrations in human genome A Komkov, A Minervina, G Nugmanov, V Nazarov, K Khodosevich, ... RETROVIROLOGY 13, 2016 | | 2016 |
A novel normalization based approach for somatic Alu insertions identification in human brain cells AA Minervina, A Komkov, A Kurnosov, V Nazarov, M Pogorelyy, ... FEBS JOURNAL 282, 170-171, 2015 | | 2015 |