Identification of Neuronal RNA Targets of TDP-43-containing Ribonucleoprotein Complexes*♦ CF Sephton, C Cenik, A Kucukural, EB Dammer, B Cenik, YH Han, ... Journal of biological chemistry 286 (2), 1204-1215, 2011 | 518 | 2011 |
The cellular EJC interactome reveals higher-order mRNP structure and an EJC-SR protein nexus G Singh, A Kucukural, C Cenik, JD Leszyk, SA Shaffer, Z Weng, MJ Moore Cell 151 (4), 750-764, 2012 | 387 | 2012 |
Next generation software for functional trend analysis GF Berriz, JE Beaver, C Cenik, M Tasan, FP Roth Bioinformatics 25 (22), 3043-3044, 2009 | 315 | 2009 |
Integrative analysis of RNA, translation, and protein levels reveals distinct regulatory variation across humans. C Cenik, ES Cenik, GW Byeon, F Grubert, SI Candille, D Spacek, ... Genome Research 25 (11), 1610-1621, 2015 | 247 | 2015 |
Introns in UTRs: why we should stop ignoring them AA Bicknell, C Cenik, HN Chua, FP Roth, MJ Moore Bioessays 34 (12), 1025-1034, 2012 | 155 | 2012 |
Staufen1 senses overall transcript secondary structure to regulate translation EP Ricci, A Kucukural, C Cenik, BC Mercier, G Singh, EE Heyer, ... Nature structural & molecular biology 21 (1), 26-35, 2014 | 152 | 2014 |
Genome-wide functional analysis of human 5'untranslated region introns C Cenik, A Derti, JC Mellor, GF Berriz, FP Roth Genome biology 11, 1-17, 2010 | 106 | 2010 |
Genome analysis reveals interplay between 5′ UTR introns and nuclear mRNA export for secretory and mitochondrial genes C Cenik, HN Chua, H Zhang, SP Tarnawsky, A Akef, A Derti, M Tasan, ... PLoS genetics 7 (4), e1001366, 2011 | 104 | 2011 |
Identification of significantly mutated regions across cancer types highlights a rich landscape of functional molecular alterations CL Araya, C Cenik, JA Reuter, G Kiss, VS Pande, MP Snyder, ... Nature genetics 48 (2), 117-125, 2016 | 99 | 2016 |
RanBP2/Nup358 potentiates the translation of a subset of mRNAs encoding secretory proteins K Mahadevan, H Zhang, A Akef, XA Cui, S Gueroussov, C Cenik, FP Roth, ... PLoS biology 11 (4), e1001545, 2013 | 76 | 2013 |
An optimized kit-free method for making strand-specific deep sequencing libraries from RNA fragments EE Heyer, H Ozadam, EP Ricci, C Cenik, MJ Moore Nucleic acids research 43 (1), e2-e2, 2015 | 71 | 2015 |
Genes with 5′ terminal oligopyrimidine tracts preferentially escape global suppression of translation by the SARS-CoV-2 Nsp1 protein S Rao, I Hoskins, T Tonn, PD Garcia, H Ozadam, ES Cenik, C Cenik Rna 27 (9), 1025-1045, 2021 | 58 | 2021 |
Absence of evidence for MHC–dependent mate selection within HapMap populations A Derti, C Cenik, P Kraft, FP Roth PLoS genetics 6 (4), e1000925, 2010 | 48 | 2010 |
Single-cell quantification of ribosome occupancy in early mouse development H Ozadam, T Tonn, CM Han, A Segura, I Hoskins, S Rao, V Ghatpande, ... Nature 618 (7967), 1057-1064, 2023 | 46 | 2023 |
Maternal ribosomes are sufficient for tissue diversification during embryonic development in C. elegans ES Cenik, X Meng, NH Tang, RN Hall, JA Arribere, C Cenik, Y Jin, A Fire Developmental cell 48 (6), 811-826. e6, 2019 | 46 | 2019 |
ASPeak: an abundance sensitive peak detection algorithm for RIP-Seq A Kucukural, H Özadam, G Singh, MJ Moore, C Cenik Bioinformatics 29 (19), 2485-2486, 2013 | 46 | 2013 |
RiboFlow, RiboR and RiboPy: an ecosystem for analyzing ribosome profiling data at read length resolution H Ozadam, M Geng, C Cenik Bioinformatics 36 (9), 2929-2931, 2020 | 37 | 2020 |
A common class of transcripts with 5′-intron depletion, distinct early coding sequence features, and N1-methyladenosine modification C Cenik, HN Chua, G Singh, A Akef, MP Snyder, AF Palazzo, MJ Moore, ... Rna 23 (3), 270-283, 2017 | 20 | 2017 |
Simultaneous RNA purification and size selection using on-chip isotachophoresis with an ionic spacer CM Han, D Catoe, SA Munro, R Khnouf, MP Snyder, JG Santiago, ... Lab on a Chip 19 (16), 2741-2749, 2019 | 18 | 2019 |
Plasma sterols and depressive symptom severity in a population-based cohort B Cenik, C Cenik, MP Snyder, ES Brown PLoS One 12 (9), e0184382, 2017 | 18 | 2017 |