Ahmad Abdullah Mannan
Ahmad Abdullah Mannan
Research Associate, Department of Bioengineering
Verified email at - Homepage
Cited by
Cited by
Fundamental design principles for transcription-factor-based metabolite biosensors
AA Mannan, D Liu, F Zhang, DA Oyarzún
ACS synthetic biology 6 (10), 1851-1859, 2017
Modeling and simulation of the main metabolism in Escherichia coli and its several single-gene knockout mutants with experimental verification
TAA Kadir, AA Mannan, AM Kierzek, J McFadden, K Shimizu
Microbial cell factories 9 (1), 1-21, 2010
Dynamic metabolic control: towards precision engineering of metabolism
D Liu, AA Mannan, Y Han, DA Oyarzún, F Zhang
Journal of Industrial Microbiology and Biotechnology 45 (7), 535-543, 2018
Interrogation of global mutagenesis data with a genome scale model of Neisseria meningitidis to assess gene fitness in vitro and in sera
TA Mendum, J Newcombe, AA Mannan, AM Kierzek, J McFadden
Genome biology 12 (12), 1-15, 2011
Integrating kinetic model of E. coli with genome scale metabolic fluxes overcomes its open system problem and reveals bistability in central metabolism
AA Mannan, Y Toya, K Shimizu, J McFadden, AM Kierzek, A Rocco
PloS one 10 (10), e0139507, 2015
MUFINS: multi-formalism interaction network simulator
H Wu, A Von Kamp, V Leoncikas, W Mori, N Sahin, A Gevorgyan, C Linley, ...
NPJ systems biology and applications 2 (1), 1-10, 2016
Designing an irreversible metabolic switch for scalable induction of microbial chemical production
AA Mannan, DG Bates
Nature Communications 12 (3419), 2021
Metabolite sequestration enables rapid recovery from fatty acid depletion in Escherichia coli
CJ Hartline, AA Mannan, D Liu, F Zhang, DA Oyarzún
Mbio 11 (2), 10.1128/mbio. 03112-19, 2020
Trade-offs in biosensor optimization for dynamic pathway engineering
BK Verma, AA Mannan, F Zhang, DA Oyarzún
ACS synthetic biology 11 (1), 228-240, 2021
Multiobjective optimization of gene circuits for metabolic engineering
I Otero-Muras, AA Mannan, JR Banga, DA Oyarzún
IFAC-PapersOnLine 52 (26), 13-16, 2019
gcFront: a tool for determining a Pareto front of growth-coupled cell factory designs
L Legon, C Corre, DG Bates, AA Mannan
Bioinformatics 38 (14), 3657-3659, 2022
Integration of Kinetic and Whole-Cell Stoichiometric Model For Hybrid Simulations of Bacterial Central Metabolism.
AA Mannan
University of Surrey (United Kingdom)., 2012
Natural host feedback simplifies the design of metabolic switches
APS Darlington, AA Mannan, DG Bates
2023 62nd IEEE Conference on Decision and Control (CDC), 2693-2698, 2023
Signaling tug-of-war delivers the whole message
AY Weiße, AA Mannan, DA Oyarzún
Cell Systems 3 (5), 414-416, 2016
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