| Nucleus segmentation across imaging experiments: the 2018 Data Science Bowl JC Caicedo, A Goodman, KW Karhohs, BA Cimini, J Ackerman, ... Nature methods 16 (12), 1247-1253, 2019 | 687 | 2019 |
| Morphology and gene expression profiling provide complementary information for mapping cell state GP Way, T Natoli, A Adeboye, L Litichevskiy, A Yang, X Lu, JC Caicedo, ... Cell systems 13 (11), 911-923. e9, 2022 | 82 | 2022 |
| High-dimensional gene expression and morphology profiles of cells across 28,000 genetic and chemical perturbations M Haghighi, JC Caicedo, BA Cimini, AE Carpenter, S Singh Nature methods 19 (12), 1550-1557, 2022 | 72 | 2022 |
| Moving towards a real-time system for automatically recognizing stereotypical motor movements in individuals on the autism spectrum using wireless accelerometry MS Goodwin, M Haghighi, Q Tang, M Akcakaya, D Erdogmus, S Intille Proceedings of the 2014 ACM international joint conference on pervasive and …, 2014 | 62 | 2014 |
| Three million images and morphological profiles of cells treated with matched chemical and genetic perturbations SN Chandrasekaran, BA Cimini, A Goodale, L Miller, M Kost-Alimova, ... Nature Methods, 1-8, 2024 | 61 | 2024 |
| Automatic renal segmentation in DCE-MRI using convolutional neural networks M Haghighi, SK Warfield, S Kurugol 2018 IEEE 15th International Symposium on Biomedical Imaging (ISBI 2018 …, 2018 | 55 | 2018 |
| EEG-assisted modulation of sound sources in the auditory scene M Haghighi, M Moghadamfalahi, M Akcakaya, D Erdogmus Biomedical signal processing and control 39, 263-270, 2018 | 27 | 2018 |
| A genome-wide atlas of human cell morphology M Ramezani, J Bauman, A Singh, E Weisbart, J Yong, M Lozada, GP Way, ... bioRxiv, 2023 | 22 | 2023 |
| High-dimensional phenotyping to define the genetic basis of cellular morphology M Tegtmeyer, J Arora, S Asgari, BA Cimini, A Nadig, E Peirent, ... Nature Communications 15 (1), 347, 2024 | 20 | 2024 |
| Interpreting Image‐based Profiles using Similarity Clustering and Single‐Cell Visualization F Garcia‐Fossa, MC Cruz, M Haghighi, MB de Jesus, S Singh, ... Current protocols 3 (3), e713, 2023 | 11 | 2023 |
| A graphical model for online auditory scene modulation using EEG evidence for attention M Haghighi, M Moghadamfalahi, M Akcakaya, BG Shinn-Cunningham, ... IEEE Transactions on Neural Systems and Rehabilitation Engineering 25 (11 …, 2017 | 8 | 2017 |
| Pervasive mislocalization of pathogenic coding variants underlying human disorders J Lacoste, M Haghighi, S Haider, C Reno, ZY Lin, D Segal, WW Qian, ... Cell 187 (23), 6725-6741. e13, 2024 | 7 | 2024 |
| Toward a brain interface for tracking attended auditory sources M Haghighi, M Moghadamfalahi, H Nezamfar, M Akcakaya, D Erdogmus 2016 IEEE 26th International Workshop on Machine Learning for Signal …, 2016 | 5 | 2016 |
| Active learning for efficient querying from a human oracle with noisy response in a language-model assisted brain computer interface M Moghadamfalahi, J Sourati, M Akcakaya, H Nezamfar, M Haghighi, ... 2015 IEEE 25th International Workshop on Machine Learning for Signal …, 2015 | 4 | 2015 |
| Context-aware recursive bayesian graph traversal in BCIs SSM Salehi, M Moghadamfalahi, H Nezamfar, M Haghighi, D Erdogmus 2017 39th Annual International Conference of the IEEE Engineering in …, 2017 | 1 | 2017 |
| Initial assessment of artifact filtering for RSVP Keyboard™ M Haghighi, M Akcakaya, U Orhan, D Erdogmus, B Oken, M Fried-Oken 2013 IEEE Signal Processing in Medicine and Biology Symposium (SPMB), 1-5, 2013 | 1 | 2013 |
| Morphological map of under-and over-expression of genes in human cells SN Chandrasekaran, E Alix, J Arevalo, A Borowa, PJ Byrne, WG Charles, ... bioRxiv, 2024.12. 02.624527, 2024 | | 2024 |
| Pseudo-Labeling Enhanced by Privileged Information and Its Application to In Situ Sequencing Images M Haghighi, MC Cruz, E Weisbart, BA Cimini, A Singh, J Bauman, ... Proceedings of the Thirty-Second International Joint Conference on …, 2023 | | 2023 |
| Pseudo-labeling enhanced by privileged information and its application to in situ sequencing images M Haghighi, MC Cruz, E Weisbart, BA Cimini, A Singh, J Bauman, ... arXiv preprint arXiv:2306.15898, 2023 | | 2023 |
| Context-Aware Recursive Bayesian Graph Traversal in BCIs S Sadegh Mohseni Salehi, M Moghadamfalahi, H Nezamfar, M Haghighi, ... arXiv e-prints, arXiv: 1703.02938, 2017 | | 2017 |
