| Evolutionary trends in host physiology outweigh dietary niche in structuring primate gut microbiomes KR Amato, J G. Sanders, SJ Song, M Nute, JL Metcalf, LR Thompson, ... The ISME journal 13 (3), 576-587, 2019 | 237 | 2019 |
| A comparative study of SVDquartets and other coalescent-based species tree estimation methods J Chou, A Gupta, S Yaduvanshi, R Davidson, M Nute, S Mirarab, ... BMC genomics 16 (10), 1-11, 2015 | 169 | 2015 |
| Current progress and open challenges for applying deep learning across the biosciences N Sapoval, A Aghazadeh, MG Nute, DA Antunes, A Balaji, R Baraniuk, ... Nature Communications 13 (1), 1728, 2022 | 94 | 2022 |
| Long-branch attraction in species tree estimation: inconsistency of partitioned likelihood and topology-based summary methods S Roch, M Nute, T Warnow Systematic Biology 68 (2), 281-297, 2019 | 81 | 2019 |
| Misunderstood parameter of NCBI BLAST impacts the correctness of bioinformatics workflows N Shah, MG Nute, T Warnow, M Pop Bioinformatics 35 (9), 1613-1614, 2019 | 73 | 2019 |
| The Performance of Coalescent-Based Species Tree Estimation Methods under Models of Missing Data M Nute, J Chou, EK Molloy, T Warnow BMC Genomics 19 (5), 41-57, 2018 | 72 | 2018 |
| Emu: species-level microbial community profiling of full-length 16S rRNA Oxford Nanopore sequencing data KD Curry, Q Wang, MG Nute, A Tyshaieva, E Reeves, S Soriano, Q Wu, ... Nature methods 19 (7), 845-853, 2022 | 56 | 2022 |
| Evaluating statistical multiple sequence alignment in comparison to other alignment methods on protein data sets M Nute, E Saleh, T Warnow Systematic biology 68 (3), 396-411, 2019 | 26 | 2019 |
| HIPPI: highly accurate protein family classification with ensembles of HMMs N Nguyen, M Nute, S Mirarab, T Warnow BMC genomics 17 (10), 89-100, 2016 | 23 | 2016 |
| Scaling statistical multiple sequence alignment to large datasets M Nute, T Warnow BMC genomics 17 (10), 135-144, 2016 | 17 | 2016 |
| Multiple genome alignment in the telomere-to-telomere assembly era B Kille, A Balaji, FJ Sedlazeck, M Nute, TJ Treangen Genome Biology 23 (1), 182, 2022 | 14 | 2022 |
| Alterations to the gut microbiome after sport-related concussion in a collegiate football players cohort: A pilot study S Soriano, K Curry, SS Sadrameli, Q Wang, M Nute, E Reeves, R Kabir, ... Brain, Behavior, & Immunity-Health 21, 100438, 2022 | 12 | 2022 |
| It takes guts to learn: machine learning techniques for disease detection from the gut microbiome KD Curry, MG Nute, TJ Treangen Emerging Topics in Life Sciences 5 (6), 815-827, 2021 | 9 | 2021 |
| NJst and ASTRID are not statistically consistent under a random model of missing data JA Rhodes, MG Nute, T Warnow arXiv preprint arXiv:2001.07844, 2020 | 7 | 2020 |
| Accelerating SARS-CoV-2 low frequency variant calling on ultra deep sequencing datasets B Kille, Y Liu, N Sapoval, M Nute, L Rauchwerger, N Amato, TJ Treangen 2021 IEEE International Parallel and Distributed Processing Symposium …, 2021 | 5 | 2021 |
| KOMB: K-core based de novo characterization of copy number variation in microbiomes A Balaji, N Sapoval, C Seto, RAL Elworth, Y Fu, MG Nute, T Savidge, ... Computational and Structural Biotechnology Journal 20, 3208-3222, 2022 | 3 | 2022 |
| Statistical consistency of coalescent-based species tree methods under models of missing data M Nute, J Chou Comparative Genomics: 15th International Workshop, RECOMB CG 2017, Barcelona …, 2017 | 2 | 2017 |
| Bakdrive: Identifying the Minimum Set of Bacterial Driver Species across Multiple Microbial Communities Q Wang, M Nute, T Treangen bioRxiv, 2021.09. 24.461746, 2021 | 1 | 2021 |
| Correction to: The performance of coalescent-based species tree estimation methods under models of missing data M Nute, J Chou, EK Molloy, T Warnow BMC genomics 21, 1-2, 2020 | 1 | 2020 |
| Benchmarking statistical multiple sequence alignment M Nute, E Saleh, T Warnow bioRxiv, 304659, 2018 | 1 | 2018 |
Tandy WarnowGrainger Distinguished Chair in Engineering, UIUCVerified email at illinois.edu
