Matthias Scholz
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MetaPhlAn2 for enhanced metagenomic taxonomic profiling
DT Truong, EA Franzosa, TL Tickle, M Scholz, G Weingart, E Pasolli, ...
Nature methods 12 (10), 902-903, 2015
Kernel PCA and de-noising in feature spaces
S Mika, B Schölkopf, AJ Smola, KR Müller, M Scholz, G Rätsch
Advances in neural information processing systems 11 (1), 536-542, 1999
pcaMethods—a bioconductor package providing PCA methods for incomplete data
W Stacklies, H Redestig, M Scholz, D Walther, J Selbig
Bioinformatics 23 (9), 1164-1167, 2007
Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3
F Beghini, LJ McIver, A Blanco-Míguez, L Dubois, F Asnicar, S Maharjan, ...
elife 10, e65088, 2021
A diet low in FODMAPs reduces symptoms in patients with irritable bowel syndrome and a probiotic restores bifidobacterium species: a randomized controlled trial
HM Staudacher, MCE Lomer, FM Farquharson, P Louis, F Fava, ...
Gastroenterology 153 (4), 936-947, 2017
Strain-level microbial epidemiology and population genomics from shotgun metagenomics
M Scholz, DV Ward, E Pasolli, T Tolio, M Zolfo, F Asnicar, DT Truong, ...
Nature methods 13 (5), 435-438, 2016
Metabolite fingerprinting: detecting biological features by independent component analysis
M Scholz, S Gatzek, A Sterling, O Fiehn, J Selbig
Bioinformatics 20 (15), 2447-2454, 2004
Studying vertical microbiome transmission from mothers to infants by strain-level metagenomic profiling
F Asnicar, S Manara, M Zolfo, DT Truong, M Scholz, F Armanini, P Ferretti, ...
MSystems 2 (1), e00164-16, 2017
Bifidobacteria exhibit social behavior through carbohydrate resource sharing in the gut
C Milani, GA Lugli, S Duranti, F Turroni, L Mancabelli, C Ferrario, ...
Scientific reports 5 (1), 15782, 2015
Non-linear PCA: a missing data approach
M Scholz, F Kaplan, CL Guy, J Kopka, J Selbig
Bioinformatics 21 (20), 3887-3895, 2005
Nonlinear principal component analysis: neural network models and applications
M Scholz, M Fraunholz, J Selbig
Principal manifolds for data visualization and dimension reduction, 44-67, 2008
Metagenomic sequencing with strain-level resolution implicates uropathogenic E. coli in necrotizing enterocolitis and mortality in preterm infants
DV Ward, M Scholz, M Zolfo, DH Taft, KR Schibler, A Tett, N Segata, ...
Cell reports 14 (12), 2912-2924, 2016
Integration of metabolomic and proteomic phenotypes: analysis of data covariance dissects starch and RFO metabolism from low and high temperature compensation response in …
S Wienkoop, K Morgenthal, F Wolschin, M Scholz, J Selbig, W Weckwerth
Molecular & Cellular Proteomics 7 (9), 1725-1736, 2008
Statistics of narrow-band single photons for quantum memories generated by ultrabright cavity-enhanced parametric down-conversion
M Scholz, L Koch, O Benson
Physical review letters 102 (6), 063603, 2009
Heterosis manifestation during early Arabidopsis seedling development is characterized by intermediate gene expression and enhanced metabolic activity in the hybrids
RC Meyer, H Witucka‐Wall, M Becher, A Blacha, A Boudichevskaia, ...
The Plant Journal 71 (4), 669-683, 2012
Nonlinear PCA: a new hierarchical approach.
M Scholz, R Vigário
Esann, 439-444, 2002
Effects of diet-modulated autologous fecal microbiota transplantation on weight regain
E Rinott, I Youngster, AY Meir, G Tsaban, H Zelicha, A Kaplan, D Knights, ...
Gastroenterology 160 (1), 158-173. e10, 2021
LC-MS based global metabolite profiling of grapes: solvent extraction protocol optimisation
G Theodoridis, H Gika, P Franceschi, L Caputi, P Arapitsas, M Scholz, ...
Metabolomics, 1-11, 2011
Correlative GC-TOF-MS-based metabolite profiling and LC-MS-based protein profiling reveal time-related systemic regulation of metabolite–protein networks and improve pattern …
K Morgenthal, S Wienkoop, M Scholz, J Selbig, W Weckwerth
Metabolomics 1, 109-121, 2005
A metabolomic approach to the study of wine micro-oxygenation
P Arapitsas, M Scholz, U Vrhovsek, S Di Blasi, A Biondi Bartolini, ...
PLoS One 7 (5), e37783, 2012
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Articles 1–20