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Matthias Scholz
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MetaPhlAn2 for enhanced metagenomic taxonomic profiling
DT Truong, EA Franzosa, TL Tickle, M Scholz, G Weingart, E Pasolli, ...
Nature methods 12 (10), 902-903, 2015
20222015
Kernel PCA and de-noising in feature spaces
S Mika, B Schölkopf, AJ Smola, KR Müller, M Scholz, G Rätsch
Advances in neural information processing systems 11 (1), 536-542, 1999
14571999
pcaMethods—a bioconductor package providing PCA methods for incomplete data
W Stacklies, H Redestig, M Scholz, D Walther, J Selbig
Bioinformatics 23 (9), 1164-1167, 2007
11192007
Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3
F Beghini, LJ McIver, A Blanco-Míguez, L Dubois, F Asnicar, S Maharjan, ...
elife 10, e65088, 2021
10702021
A diet low in FODMAPs reduces symptoms in patients with irritable bowel syndrome and a probiotic restores bifidobacterium species: a randomized controlled trial
HM Staudacher, MCE Lomer, FM Farquharson, P Louis, F Fava, ...
Gastroenterology 153 (4), 936-947, 2017
4452017
Strain-level microbial epidemiology and population genomics from shotgun metagenomics
M Scholz, DV Ward, E Pasolli, T Tolio, M Zolfo, F Asnicar, DT Truong, ...
Nature methods 13 (5), 435-438, 2016
4142016
Metabolite fingerprinting: detecting biological features by independent component analysis
M Scholz, S Gatzek, A Sterling, O Fiehn, J Selbig
Bioinformatics 20 (15), 2447-2454, 2004
3442004
Studying vertical microbiome transmission from mothers to infants by strain-level metagenomic profiling
F Asnicar, S Manara, M Zolfo, DT Truong, M Scholz, F Armanini, P Ferretti, ...
MSystems 2 (1), e00164-16, 2017
3332017
Bifidobacteria exhibit social behavior through carbohydrate resource sharing in the gut
C Milani, GA Lugli, S Duranti, F Turroni, L Mancabelli, C Ferrario, ...
Scientific reports 5 (1), 15782, 2015
2732015
Non-linear PCA: a missing data approach
M Scholz, F Kaplan, CL Guy, J Kopka, J Selbig
Bioinformatics 21 (20), 3887-3895, 2005
2692005
Nonlinear principal component analysis: neural network models and applications
M Scholz, M Fraunholz, J Selbig
Principal manifolds for data visualization and dimension reduction, 44-67, 2008
2352008
Metagenomic sequencing with strain-level resolution implicates uropathogenic E. coli in necrotizing enterocolitis and mortality in preterm infants
DV Ward, M Scholz, M Zolfo, DH Taft, KR Schibler, A Tett, N Segata, ...
Cell reports 14 (12), 2912-2924, 2016
1722016
Integration of metabolomic and proteomic phenotypes: analysis of data covariance dissects starch and RFO metabolism from low and high temperature compensation response in …
S Wienkoop, K Morgenthal, F Wolschin, M Scholz, J Selbig, W Weckwerth
Molecular & Cellular Proteomics 7 (9), 1725-1736, 2008
1722008
Statistics of narrow-band single photons for quantum memories generated by ultrabright cavity-enhanced parametric down-conversion
M Scholz, L Koch, O Benson
Physical review letters 102 (6), 063603, 2009
1712009
Heterosis manifestation during early Arabidopsis seedling development is characterized by intermediate gene expression and enhanced metabolic activity in the hybrids
RC Meyer, H Witucka‐Wall, M Becher, A Blacha, A Boudichevskaia, ...
The Plant Journal 71 (4), 669-683, 2012
1462012
Nonlinear PCA: a new hierarchical approach.
M Scholz, R Vigário
Esann, 439-444, 2002
1422002
Effects of diet-modulated autologous fecal microbiota transplantation on weight regain
E Rinott, I Youngster, AY Meir, G Tsaban, H Zelicha, A Kaplan, D Knights, ...
Gastroenterology 160 (1), 158-173. e10, 2021
1182021
LC-MS based global metabolite profiling of grapes: solvent extraction protocol optimisation
G Theodoridis, H Gika, P Franceschi, L Caputi, P Arapitsas, M Scholz, ...
Metabolomics, 1-11, 2011
1032011
Correlative GC-TOF-MS-based metabolite profiling and LC-MS-based protein profiling reveal time-related systemic regulation of metabolite–protein networks and improve pattern …
K Morgenthal, S Wienkoop, M Scholz, J Selbig, W Weckwerth
Metabolomics 1, 109-121, 2005
992005
A metabolomic approach to the study of wine micro-oxygenation
P Arapitsas, M Scholz, U Vrhovsek, S Di Blasi, A Biondi Bartolini, ...
PLoS One 7 (5), e37783, 2012
982012
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Articles 1–20