| ASGAL: aligning RNA-Seq data to a splicing graph to detect novel alternative splicing events L Denti, R Rizzi, S Beretta, GD Vedova, M Previtali, P Bonizzoni BMC bioinformatics 19, 1-21, 2018 | 43 | 2018 |
| Overlap graphs and de Bruijn graphs: data structures for de novo genome assembly in the big data era R Rizzi, S Beretta, M Patterson, Y Pirola, M Previtali, G Della Vedova, ... Quantitative Biology 7, 278-292, 2019 | 40 | 2019 |
| Fully dynamic de Bruijn graphs D Belazzougui, T Gagie, V Mäkinen, M Previtali String Processing and Information Retrieval: 23rd International Symposium …, 2016 | 33 | 2016 |
| Bidirectional variable-order de Bruijn graphs D Belazzougui, T Gagie, V Mäkinen, M Previtali, SJ Puglisi LATIN 2016: Theoretical Informatics: 12th Latin American Symposium, Ensenada …, 2016 | 30 | 2016 |
| MALVA: genotyping by Mapping-free ALlele detection of known VAriants L Denti, M Previtali, G Bernardini, A Schönhuth, P Bonizzoni Iscience 18, 20-27, 2019 | 28 | 2019 |
| FSG: fast string graph construction for de novo assembly P Bonizzoni, GD Vedova, Y Pirola, M Previtali, R Rizzi Journal of computational biology 24 (10), 953-968, 2017 | 20 | 2017 |
| LSG: an external-memory tool to compute string graphs for next-generation sequencing data assembly P Bonizzoni, GD Vedova, Y Pirola, M Previtali, R Rizzi Journal of Computational Biology 23 (3), 137-149, 2016 | 18 | 2016 |
| Triplet-based similarity score for fully multilabeled trees with poly-occurring labels S Ciccolella, G Bernardini, L Denti, P Bonizzoni, M Previtali, ... Bioinformatics 37 (2), 178-184, 2021 | 16 | 2021 |
| Multithread multistring Burrows–Wheeler transform and longest common prefix array P Bonizzoni, G Della Vedova, Y Pirola, M Previtali, R Rizzi Journal of computational biology 26 (9), 948-961, 2019 | 15 | 2019 |
| An external-memory algorithm for string graph construction P Bonizzoni, G Della Vedova, Y Pirola, M Previtali, R Rizzi Algorithmica 78 (2), 394-424, 2017 | 14 | 2017 |
| Mapping RNA-seq data to a transcript graph via approximate pattern matching to a hypertext S Beretta, P Bonizzoni, L Denti, M Previtali, R Rizzi Algorithms for Computational Biology: 4th International Conference, AlCoB …, 2017 | 12 | 2017 |
| Bidirectional variable-order de bruijn graphs D Belazzougui, T Gagie, V Mäkinen, M Previtali, SJ Puglisi International Journal of Foundations of Computer Science 29 (08), 1279-1295, 2018 | 11 | 2018 |
| Constructing string graphs in external memory P Bonizzoni, G Della Vedova, Y Pirola, M Previtali, R Rizzi Algorithms in Bioinformatics: 14th International Workshop, WABI 2014 …, 2014 | 10 | 2014 |
| Computing the multi-string BWT and LCP array in external memory P Bonizzoni, G Della Vedova, Y Pirola, M Previtali, R Rizzi Theoretical Computer Science 862, 42-58, 2021 | 9 | 2021 |
| Shark: fishing relevant reads in an RNA-Seq sample L Denti, Y Pirola, M Previtali, T Ceccato, G Della Vedova, R Rizzi, ... Bioinformatics 37 (4), 464-472, 2021 | 9 | 2021 |
| MALVIRUS: an integrated application for viral variant analysis S Ciccolella, L Denti, P Bonizzoni, G Della Vedova, Y Pirola, M Previtali BMC bioinformatics 22 (Suppl 15), 625, 2021 | 8* | 2021 |
| Divide and conquer computation of the multi-string BWT and LCP array P Bonizzoni, G Della Vedova, S Nicosia, Y Pirola, M Previtali, R Rizzi Sailing Routes in the World of Computation: 14th Conference on Computability …, 2018 | 8 | 2018 |
| A New Lightweight Algorithm to compute the BWT and the LCP array of a Set of Strings P Bonizzoni, G Della Vedova, S Nicosia, M Previtali, R Rizzi arXiv preprint arXiv:1607.08342, 2016 | 5 | 2016 |
| Numeric Lyndon-based feature embedding of sequencing reads for machine learning approaches P Bonizzoni, M Costantini, C De Felice, A Petescia, Y Pirola, M Previtali, ... Information Sciences 607, 458-476, 2022 | 4 | 2022 |
| Graph theory and definitions S Beretta, L Denti, M Previtali Encyclopedia of Bioinformatics and Computational Biology: ABC of …, 2019 | 4 | 2019 |
Paola BonizzoniUniversity of Milano BicoccaVerified email at unimib.it
