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| A draft map of the human proteome MS Kim, SM Pinto, D Getnet, RS Nirujogi, SS Manda, R Chaerkady, ... Nature 509 (7502), 575-581, 2014 | 2432 | 2014 |
| Enrichment map: a network-based method for gene-set enrichment visualization and interpretation D Merico, R Isserlin, O Stueker, A Emili, GD Bader PloS one 5 (11), e13984, 2010 | 2149 | 2010 |
| Pathway enrichment analysis and visualization of omics data using g: Profiler, GSEA, Cytoscape and EnrichmentMap J Reimand, R Isserlin, V Voisin, M Kucera, C Tannus-Lopes, ... Nature protocols 14 (2), 482-517, 2019 | 1404 | 2019 |
| The biomolecular interaction network database and related tools 2005 update C Alfarano, CE Andrade, K Anthony, N Bahroos, M Bajec, K Bantoft, ... Nucleic acids research 33 (suppl_1), D418-D424, 2005 | 742 | 2005 |
| Delineation of two clinically and molecularly distinct subgroups of posterior fossa ependymoma H Witt, SC Mack, M Ryzhova, S Bender, M Sill, R Isserlin, A Benner, ... Cancer cell 20 (2), 143-157, 2011 | 558 | 2011 |
| A call for systematic research on solute carriers A Cesar-Razquin, B Snijder, T Frappier-Brinton, R Isserlin, G Gyimesi, ... Cell 162 (3), 478-487, 2015 | 537 | 2015 |
| Single-cell transcriptomic profiling of the aging mouse brain M Ximerakis, SL Lipnick, BT Innes, SK Simmons, X Adiconis, D Dionne, ... Nature neuroscience 22 (10), 1696-1708, 2019 | 484 | 2019 |
| Too many roads not taken AM Edwards, R Isserlin, GD Bader, SV Frye, TM Willson, FH Yu Nature 470 (7333), 163-165, 2011 | 433 | 2011 |
| PSICQUIC and PSISCORE: accessing and scoring molecular interactions B Aranda, H Blankenburg, S Kerrien, FSL Brinkman, A Ceol, E Chautard, ... Nature methods 8 (7), 528-529, 2011 | 313 | 2011 |
| AutoAnnotate: A Cytoscape app for summarizing networks with semantic annotations M Kucera, R Isserlin, A Arkhangorodsky, GD Bader F1000Research 5, 2016 | 296 | 2016 |
| miR-126 regulates distinct self-renewal outcomes in normal and malignant hematopoietic stem cells ER Lechman, B Gentner, SWK Ng, EM Schoof, P van Galen, JA Kennedy, ... Cancer cell 29 (2), 214-228, 2016 | 287 | 2016 |
| WordCloud: a Cytoscape plugin to create a visual semantic summary of networks L Oesper, D Merico, R Isserlin, GD Bader Source code for biology and medicine 6, 1-4, 2011 | 169 | 2011 |
| RCy3: Network biology using Cytoscape from within R JA Gustavsen, S Pai, R Isserlin, B Demchak, AR Pico F1000Research 8, 2019 | 149 | 2019 |
| Enrichment Map–a Cytoscape app to visualize and explore OMICs pathway enrichment results R Isserlin, D Merico, V Voisin, GD Bader F1000Research 3, 2014 | 133 | 2014 |
| Comparative proteomics profiling of a phospholamban mutant mouse model of dilated cardiomyopathy reveals progressive intracellular stress responses AO Gramolini, T Kislinger, R Alikhani-Koopaei, V Fong, NJ Thompson, ... Molecular & Cellular Proteomics 7 (3), 519-533, 2008 | 132 | 2008 |
| The biomolecular interaction network database in PSI-MI 2.5 R Isserlin, RA El-Badrawi, GD Bader Database 2011, baq037, 2011 | 120 | 2011 |
| A lentiviral functional proteomics approach identifies chromatin remodeling complexes important for the induction of pluripotency AB Mak, Z Ni, JA Hewel, GI Chen, G Zhong, K Karamboulas, K Blakely, ... Molecular & Cellular Proteomics 9 (5), 811-823, 2010 | 112 | 2010 |
| netDx: interpretable patient classification using integrated patient similarity networks S Pai, S Hui, R Isserlin, MA Shah, H Kaka, GD Bader Molecular systems biology 15 (3), e8497, 2019 | 79 | 2019 |
| Visualizing gene-set enrichment results using the Cytoscape plug-in enrichment map D Merico, R Isserlin, GD Bader Network Biology: Methods and Applications, 257-277, 2011 | 78 | 2011 |
