Single-nucleus Hi-C reveals unique chromatin reorganization at oocyte-to-zygote transition IM Flyamer*, J Gassler*, M Imakaev*, HB Brandão, SV Ulianov, ... Nature 544 (7648), 110-114, 2017 | 393 | 2017 |
Active chromatin and transcription play a key role in chromosome partitioning into topologically associating domains SV Ulianov, EE Khrameeva, AA Gavrilov, IM Flyamer, P Kos, ... Genome research 26 (1), 70-84, 2016 | 252 | 2016 |
A mechanism of cohesin‐dependent loop extrusion organizes zygotic genome architecture J Gassler, HB Brandão, M Imakaev, IM Flyamer, S Ladstätter, ... The EMBO journal 36 (24), 3600-3618, 2017 | 156 | 2017 |
Developmentally regulated Shh expression is robust to TAD perturbations I Williamson, L Kane, PS Devenney, IM Flyamer, E Anderson, ... Development 146 (19), 2019 | 45 | 2019 |
Nuclear lamina integrity is required for proper spatial organization of chromatin in Drosophila SV Ulianov, SA Doronin, EE Khrameeva, PI Kos, AV Luzhin, SS Starikov, ... Nature communications 10 (1), 1-11, 2019 | 40 | 2019 |
DNA methylation directs polycomb-dependent 3D genome re-organization in naive pluripotency K McLaughlin*, IM Flyamer*, JP Thomson, HK Mjoseng, R Shukla, ... Cell reports 29 (7), 1974-1985. e6, 2019 | 28 | 2019 |
Coolpup.py: versatile pile-up analysis of Hi-C data IM Flyamer, RS Illingworth, WA Bickmore Bioinformatics 36 (10), 2980-2985, 2020 | 17* | 2020 |
A central role for canonical PRC1 in shaping the 3D nuclear landscape S Boyle*, IM Flyamer*, I Williamson, D Sengupta, WA Bickmore, ... Genes & development 34 (13-14), 931-949, 2020 | 15 | 2020 |
Activation of the alpha-globin gene expression correlates with dramatic upregulation of nearby non-globin genes and changes in local and large-scale chromatin spatial structure SV Ulianov, AA Galitsyna, IM Flyamer, AK Golov, EE Khrameeva, ... Epigenetics & chromatin 10 (1), 1-19, 2017 | 13 | 2017 |
Quantitative differences in TAD border strength underly the TAD hierarchy in Drosophila chromosomes AV Luzhin*, IM Flyamer*, EE Khrameeva, SV Ulianov, SV Razin, ... Journal of cellular biochemistry 120 (3), 4494-4503, 2019 | 12 | 2019 |
Bivalent promoter hypermethylation in cancer is linked to the H327me3/H3K4me3 ratio in embryonic stem cells DS Dunican, HK Mjoseng, L Duthie, IM Flyamer, WA Bickmore, ... BMC biology 18 (1), 1-21, 2020 | 9 | 2020 |
Evolution of the genome 3D organization: comparison of fused and segregated globin gene clusters AP Kovina, NV Petrova, ES Gushchanskaya, KV Dolgushin, ... Molecular biology and evolution 34 (6), 1492-1504, 2017 | 6 | 2017 |
Nuclear organisation and replication timing are coupled through RIF1-PP1 interaction S Gnan, IM Flyamer, KN Klein, E Castelli, A Rapp, A Maiser, N Chen, ... bioRxiv, 812156, 2020 | 5 | 2020 |
Single-nucleus Hi-C of mammalian oocytes and zygotes J Gassler, IM Flyamer, K Tachibana Methods in cell biology 144, 389-407, 2018 | 5 | 2018 |
C-TALE, a new cost-effective method for targeted enrichment of Hi-C/3C-seq libraries AK Golov, SV Ulianov, AV Luzhin, EP Kalabusheva, OL Kantidze, ... Methods 170, 48-60, 2020 | 4 | 2020 |
Low Level of Expression of C-Terminally Truncated Human FUS Causes Extensive Changes in the Spinal Cord Transcriptome of Asymptomatic Transgenic Mice EA Lysikova, S Funikov, AP Rezvykh, KD Chaprov, MS Kukharsky, ... Neurochemical research, 1-12, 2020 | 2 | 2020 |
MCM complexes are barriers that restrict cohesin-mediated loop extrusion BJH Dequeker, HB Brandao, MJ Scherr, J Gassler, S Powell, I Gaspar, ... bioRxiv, 2020 | 2 | 2020 |
Order and stochasticity in the folding of individual Drosophila genomes SV Ulianov, VV Zakharova, AA Galitsyna, PI Kos, KE Polovnikov, ... Nature Communications 12 (1), 1-17, 2021 | | 2021 |
A Mechanism of Cohesin-Dependent Loop Extrusion Organizes Mammalian Chromatin Structure in the Developing Embryo HB Brandão, J Gassler, M Imakaev, IM Flyamer, S Ladstätter, ... Biophysical Journal 114 (3), 255a, 2018 | | 2018 |
Reconfiguration of extended DNA fragment harboring alpha-globin gene domain in chicken erythroid cells. SV Ulianov, AA Galitzina, IM Flyamer, EE Khrameeva, SV Razin Biopolymers & Cell, 2015 | | 2015 |