Benjamin P Berman
Benjamin P Berman
Associate Professor, The Hebrew University of Jerusalem School of Medicine
Verified email at mail.huji.ac.il - Homepage
Title
Cited by
Cited by
Year
Comprehensive molecular portraits of human breast tumours
D Koboldt, R Fulton, M McLellan, H Schmidt, J Kalicki-Veizer, ...
Nature 490 (7418), 61-70, 2012
80382012
The genome sequence of Drosophila melanogaster
MD Adams, SE Celniker, RA Holt, CA Evans, JD Gocayne, ...
Science 287 (5461), 2185, 2000
74322000
Comprehensive molecular characterization of human colon and rectal cancer
Cancer Genome Atlas Network
Nature 487 (7407), 330, 2012
53072012
Integrated genomic analyses of ovarian carcinoma
D Bell, A Berchuck, M Birrer, J Chien, DW Cramer, F Dao, R Dhir, ...
Nature Publishing Group 474 (7353), 609-615, 2011
51372011
Identification of a CpG island methylator phenotype that defines a distinct subgroup of glioma
H Noushmehr, DJ Weisenberger, K Diefes, HS Phillips, K Pujara, ...
Cancer Cell 17 (5), 510-522, 2010
22322010
Comprehensive molecular characterization of clear cell renal cell carcinoma
Cancer Genome Atlas Research Network
Nature 499 (7456), 43, 2013
20032013
Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome
BP Berman, Y Nibu, BD Pfeiffer, P Tomancak, SE Celniker, M Levine, ...
Proceedings of the National Academy of Sciences 99 (2), 757, 2002
7292002
Regions of focal DNA hypermethylation and long-range hypomethylation in colorectal cancer coincide with nuclear lamina–associated domains
BP Berman, DJ Weisenberger, JF Aman, T Hinoue, Z Ramjan, Y Liu, ...
Nature genetics 44 (1), 40-46, 2012
5682012
Global analysis of patterns of gene expression during Drosophila embryogenesis
P Tomancak, BP Berman, A Beaton, R Weiszmann, E Kwan, ...
Genome biology 8 (7), 1-24, 2007
4532007
Annotation of the Drosophila melanogaster euchromatic genome: a systematic review
S Misra, MA Crosby, CJ Mungall, BB Matthews, KS Campbell, P Hradecky, ...
Genome biology 3 (12), research0083, 2002
4492002
The chromatin accessibility landscape of primary human cancers
MR Corces, JM Granja, S Shams, BH Louie, JA Seoane, W Zhou, ...
Science 362 (6413), eaav1898, 2018
3872018
Scientific workflow applications on Amazon EC2
G Juve, E Deelman, K Vahi, G Mehta, B Berriman, BP Berman, ...
E-Science Workshops, 2009 5th IEEE International Conference on, 59-66, 2009
3522009
Genome-wide mapping of nucleosome positioning and DNA methylation within individual DNA molecules
TK Kelly, Y Liu, FD Lay, G Liang, BP Berman, PA Jones
Genome research 22 (12), 2497-2506, 2012
3132012
Computational identification of developmental enhancers: conservation and function of transcription factor binding-site clusters in Drosophila melanogaster and Drosophila…
BP Berman, BD Pfeiffer, TR Laverty, SL Salzberg, GM Rubin, MB Eisen, ...
Genome biology 5 (9), 1-24, 2004
2762004
Functional enhancers at the gene-poor 8q24 cancer-linked locus
L Jia, G Landan, M Pomerantz, R Jaschek, P Herman, D Reich, C Yan, ...
PLoS genetics 5 (8), e1000597, 2009
2522009
Bis-SNP: combined DNA methylation and SNP calling for Bisulfite-seq data
Y Liu, KD Siegmund, PW Laird, BP Berman
Genome biology 13 (7), 1-14, 2012
2322012
The psychencode project
S Akbarian, C Liu, JA Knowles, FM Vaccarino, PJ Farnham, GE Crawford, ...
Nature neuroscience 18 (12), 1707-1712, 2015
1982015
Spatial intratumoral heterogeneity and temporal clonal evolution in esophageal squamous cell carcinoma
JJ Hao, DC Lin, HQ Dinh, A Mayakonda, YY Jiang, C Chang, Y Jiang, ...
Nature genetics 48 (12), 1500-1507, 2016
1682016
Granulocyte-monocyte progenitors and monocyte-dendritic cell progenitors independently produce functionally distinct monocytes
A Yez, SG Coetzee, A Olsson, DE Muench, BP Berman, DJ Hazelett, ...
Immunity 47 (5), 890-902. e4, 2017
1652017
Genomic androgen receptor-occupied regions with different functions, defined by histone acetylation, coregulators and transcriptional capacity
L Jia, BP Berman, U Jariwala, X Yan, JP Cogan, A Walters, T Chen, ...
PloS one 3 (11), e3645, 2008
1632008
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Articles 1–20