The Pfam protein families database A Bateman, E Birney, L Cerruti, R Durbin, L Etwiller, SR Eddy, ... Nucleic acids research 30 (1), 276-280, 2002 | 2707 | 2002 |
Functional and topological characteristics of mammalian regulatory domains O Symmons, VV Uslu, T Tsujimura, S Ruf, S Nassari, W Schwarzer, ... Genome research 24 (3), 390-400, 2014 | 526 | 2014 |
A novel function of the proneural factor Ascl1 in progenitor proliferation identified by genome-wide characterization of its targets DS Castro, B Martynoga, C Parras, V Ramesh, E Pacary, C Johnston, ... Genes & development 25 (9), 930-945, 2011 | 476 | 2011 |
Mendelian randomization E Birney Cold Spring Harbor perspectives in medicine, a041302, 2021 | 450 | 2021 |
Comparative genomics: genome-wide analysis in metazoan eukaryotes A Ureta-Vidal, L Ettwiller, E Birney Nature Reviews Genetics 4 (4), 251-262, 2003 | 320 | 2003 |
DNA damage is a pervasive cause of sequencing errors, directly confounding variant identification L Chen, P Liu, TC Evans Jr, LM Ettwiller Science 355 (6326), 752-756, 2017 | 268 | 2017 |
Epigenomic enhancer annotation reveals a key role for NFIX in neural stem cell quiescence B Martynoga, JL Mateo, B Zhou, J Andersen, A Achimastou, N Urbán, ... Genes & development 27 (16), 1769-1786, 2013 | 221 | 2013 |
Ascl1 coordinately regulates gene expression and the chromatin landscape during neurogenesis AASF Raposo, FF Vasconcelos, D Drechsel, C Marie, C Johnston, ... Cell reports 10 (9), 1544-1556, 2015 | 202 | 2015 |
Large-scale analysis of the regulatory architecture of the mouse genome with a transposon-associated sensor S Ruf, O Symmons, VV Uslu, D Dolle, C Hot, L Ettwiller, F Spitz Nature genetics 43 (4), 379-386, 2011 | 170 | 2011 |
A novel enrichment strategy reveals unprecedented number of novel transcription start sites at single base resolution in a model prokaryote and the gut microbiome L Ettwiller, J Buswell, E Yigit, I Schildkraut BMC genomics 17, 1-14, 2016 | 145 | 2016 |
The light responsive transcriptome of the zebrafish: function and regulation BD Weger, M Sahinbas, GW Otto, P Mracek, O Armant, D Dolle, K Lahiri, ... PloS one 6 (2), e17080, 2011 | 140 | 2011 |
An orchestrated gene expression component of neuronal programmed cell death revealed by cDNA array analysis LW Chiang, JM Grenier, L Ettwiller, LP Jenkins, D Ficenec, J Martin, F Jin, ... Proceedings of the National Academy of Sciences 98 (5), 2814-2819, 2001 | 132 | 2001 |
The cerebellar transcriptome during postnatal development of the Ts1Cje mouse, a segmental trisomy model for Down syndrome L Dauphinot, R Lyle, I Rivals, MT Dang, RX Moldrich, G Golfier, L Ettwiller, ... Human molecular genetics 14 (3), 373-384, 2005 | 114 | 2005 |
Trawler: de novo regulatory motif discovery pipeline for chromatin immunoprecipitation L Ettwiller, B Paten, M Ramialison, E Birney, J Wittbrodt Nature methods 4 (7), 563-565, 2007 | 108 | 2007 |
SMRT-Cappable-seq reveals complex operon variants in bacteria B Yan, M Boitano, TA Clark, L Ettwiller Nature communications 9 (1), 3676, 2018 | 106 | 2018 |
Nondestructive enzymatic deamination enables single-molecule long-read amplicon sequencing for the determination of 5-methylcytosine and 5-hydroxymethylcytosine at single-base … Z Sun, R Vaisvila, LM Hussong, B Yan, C Baum, L Saleh, ... Genome research 31 (2), 291-300, 2021 | 75 | 2021 |
De novo genesis of enhancers in vertebrates MP Eichenlaub, L Ettwiller PLoS biology 9 (11), e1001188, 2011 | 71 | 2011 |
Transcriptional disruptions in Down syndrome: a case study in the Ts1Cje mouse cerebellum during post‐natal development MC Potier, I Rivals, G Mercier, L Ettwiller, RX Moldrich, J Laffaire, ... Journal of neurochemistry 97, 104-109, 2006 | 71 | 2006 |
Characterization of the neural stem cell gene regulatory network identifies OLIG2 as a multifunctional regulator of self-renewal JL Mateo, DLC van den Berg, M Haeussler, D Drechsel, ZB Gaber, ... Genome research 25 (1), 41-56, 2015 | 61 | 2015 |
In vivo validation of a computationally predicted conserved Ath5 target gene set F Del Bene, L Ettwiller, D Skowronska-Krawczyk, H Baier, JM Matter, ... PLoS genetics 3 (9), e159, 2007 | 58 | 2007 |