Karen H Miga
Karen H Miga
Assistant Research Scientist, UC Santa Cruz Genomics Institute
Verified email at soe.ucsc.edu - Homepage
Cited by
Cited by
Initial sequence of the chimpanzee genome and comparison with the human genome
T Mikkelsen, LD Hillier, E Eichler, M Zody, D Jaffe, SP Yang, W Enard, ...
Nature 437 (7055), 69-87, 2005
Nanopore sequencing and assembly of a human genome with ultra-long reads
M Jain, S Koren, KH Miga, J Quick, AC Rand, TA Sasani, JR Tyson, ...
Nature biotechnology 36 (4), 338-345, 2018
The UCSC genome browser database: 2015 update
KR Rosenbloom, J Armstrong, GP Barber, J Casper, H Clawson, ...
Nucleic acids research 43 (D1), D670-D681, 2015
Improved data analysis for the MinION nanopore sequencer
M Jain, IT Fiddes, KH Miga, HE Olsen, B Paten, M Akeson
Nature methods 12 (4), 351-356, 2015
Telomere-to-telomere assembly of a complete human X chromosome
KH Miga, S Koren, A Rhie, MR Vollger, A Gershman, A Bzikadze, ...
Nature 585 (7823), 79-84, 2020
A genome-wide survey of structural variation between human and chimpanzee
TL Newman, E Tuzun, VA Morrison, KE Hayden, M Ventura, SD McGrath, ...
Genome research 15 (10), 1344-1356, 2005
Centromere reference models for human chromosomes X and Y satellite arrays
KH Miga, Y Newton, M Jain, N Altemose, HF Willard, WJ Kent
Genome research 24 (4), 697-707, 2014
Linear assembly of a human centromere on the Y chromosome
M Jain, HE Olsen, DJ Turner, D Stoddart, KV Bulazel, B Paten, D Haussler, ...
Nature biotechnology 36 (4), 321-323, 2018
Lineage-specific expansions of retroviral insertions within the genomes of African great apes but not humans and orangutans
CT Yohn, Z Jiang, SD McGrath, KE Hayden, P Khaitovich, ME Johnson, ...
PLoS biology 3 (4), e110, 2005
Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes
K Shafin, T Pesout, R Lorig-Roach, M Haukness, HE Olsen, C Bosworth, ...
Nature biotechnology 38 (9), 1044-1053, 2020
Sequences associated with centromere competency in the human genome
KE Hayden, ED Strome, SL Merrett, HR Lee, MK Rudd, HF Willard
Molecular and cellular biology 33 (4), 763-772, 2013
HiCanu: accurate assembly of segmental duplications, satellites, and allelic variants from high-fidelity long reads
S Nurk, BP Walenz, A Rhie, MR Vollger, GA Logsdon, R Grothe, KH Miga, ...
Genome research 30 (9), 1291-1305, 2020
Genomic characterization of large heterochromatic gaps in the human genome assembly
N Altemose, KH Miga, M Maggioni, HF Willard
PLoS computational biology 10 (5), e1003628, 2014
Completing the human genome: the progress and challenge of satellite DNA assembly
KH Miga
Chromosome Research 23 (3), 421-426, 2015
Telomere Disruption Results in Non-Random Formation of De Novo Dicentric Chromosomes Involving Acrocentric Human Chromosomes
KM Stimpson, IY Song, A Jauch, H Holtgreve-Grez, KE Hayden, ...
PLoS genetics 6 (8), e1001061, 2010
Human artificial chromosomes that bypass centromeric DNA
GA Logsdon, CW Gambogi, MA Liskovykh, EJ Barrey, V Larionov, ...
Cell 178 (3), 624-639. e19, 2019
Heterochromatin-encoded satellite RNAs induce breast cancer
Q Zhu, N Hoong, A Aslanian, T Hara, C Benner, S Heinz, KH Miga, E Ke, ...
Molecular cell 70 (5), 842-853. e7, 2018
Centromeric satellite DNAs: hidden sequence variation in the human population
KH Miga
Genes 10 (5), 352, 2019
Genome graphs
AM Novak, G Hickey, E Garrison, S Blum, A Connelly, A Dilthey, ...
bioRxiv, 101378, 2017
Human centromeric CENP-A chromatin is a homotypic, octameric nucleosome at all cell cycle points
Y Nechemia-Arbely, D Fachinetti, KH Miga, N Sekulic, GV Soni, DH Kim, ...
Journal of Cell Biology 216 (3), 607-621, 2017
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