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Ilya Akberdin
Ilya Akberdin
Biosoft.ru, Novosibirsk State University
Verified email at bionet.nsc.ru - Homepage
Title
Cited by
Cited by
Year
Methane utilization in Methylomicrobium alcaliphilum 20ZR: a systems approach
IR Akberdin, M Thompson, R Hamilton, N Desai, D Alexander, CA Henard, ...
Scientific reports 8 (1), 1-13, 2018
932018
Fatty Acid Biosynthesis Pathways in Methylomicrobium buryatense 5G(B1)
A Demidenko, IR Akberdin, M Allemann, EE Allen, MG Kalyuzhnaya
Frontiers in microbiology 7, 2167, 2017
472017
BioUML: an integrated environment for systems biology and collaborative analysis of biomedical data
F Kolpakov, I Akberdin, T Kashapov, L Kiselev, S Kolmykov, Y Kondrakhin, ...
Nucleic acids research 47 (W1), W225-W233, 2019
432019
Rare Earth Elements Alter Redox Balance in Methylomicrobium alcaliphilum 20ZR
IR Akberdin, DA Collins, R Hamilton, DY Oshchepkov, AK Shukla, ...
Frontiers in microbiology 9, 2735, 2018
372018
Inheritance of litter size at birth in farmed arctic foxes (Alopex lagopus, Canidae, Carnivora)
TI Axenovich, IV Zorkoltseva, IR Akberdin, SV Beketov, SN Kashtanov, ...
Heredity 98 (2), 99-105, 2007
352007
Metabolic model of central carbon and energy metabolisms of growing Arabidopsis thaliana in relation to sucrose translocation
M Zakhartsev, I Medvedeva, Y Orlov, I Akberdin, O Krebs, WX Schulze
BMC Plant Biology 16 (1), 1-22, 2016
312016
MAMMOTh: a new database for curated mathematical models of biomolecular systems
F Kazantsev, I Akberdin, S Lashin, N Ree, V Timonov, A Ratushny, ...
Journal of bioinformatics and computational biology 16 (01), 1740010, 2018
252018
Muconic acid production from methane using rationally-engineered methanotrophic biocatalysts
CA Henard, IR Akberdin, MG Kalyuzhnaya, MT Guarnieri
Green Chemistry 21 (24), 6731-6737, 2019
232019
Pluripotency gene network dynamics: System views from parametric analysis
IR Akberdin, NA Omelyanchuk, SI Fadeev, NE Leskova, EA Oschepkova, ...
PloS one 13 (3), e0194464, 2018
192018
A new stochastic model for subgenomic hepatitis C virus replication considers drug resistant mutants
NV Ivanisenko, EL Mishchenko, IR Akberdin, PS Demenkov, ...
PloS one 9 (3), e91502, 2014
162014
In Silico Cell: Challenges and Perspectives
IR Akberdin, FV Kazantsev, TV Ermak, VS Timonov, TM Khlebodarova, ...
Matematicheskaya biologiya i bioinformatika 8 (1), 295-315, 2013
162013
Pyrophosphate-dependent enzymes in methanotrophs: new findings and views
VN Khmelenina, ON Rozova, IR Akberdin, MG Kalyuzhnaya, ...
Methane biocatalysis: paving the way to sustainability, 83-98, 2018
112018
A Modular Visual Model of Energy Metabolism in Human Skeletal Muscle
IN Kiselev, IR Akberdin, AY Vertyshev, DV Popov, FA Kolpakov
Mathematical Biology & Bioinformatics 14 (2), 373-392, 2019
102019
A Modular Mathematical Model of Exercise-Induced Changes in Metabolism, Signaling, and Gene Expression in Human Skeletal Muscle
IR Akberdin, IN Kiselev, SS Pintus, RN Sharipov, AY Vertyshev, ...
International Journal of Molecular Sciences 22 (19), 10353, 2021
92021
A Genome-Scale Metabolic Model of 2,3-Butanediol Production by Thermophilic Bacteria Geobacillus icigianus
M Kulyashov, SE Peltek, IR Akberdin
Microorganisms 8 (7), 1002, 2020
82020
Recombinant strains of Saccharomyces cerevisiae for ethanol production from plant biomass
AS Rozanov, AV Kotenko, IR Akberdin, SE Peltek
Russian Journal of Genetics: Applied Research 5 (4), 375-382, 2015
82015
Systems Biology and Metabolic Modeling of C1-Metabolism
IR Akberdin, M Thompson, MG Kalyuzhnaya
Methane biocatalysis: Paving the way to sustainability, 99-115, 2018
72018
MGSmodeller–a computer system for reconstruction, calculation and analysis mathematical models of molecular genetic system
FV Kazantsev, IR Akberdin, KD Bezmaternykh, SA Lashin, ...
THE SIXTH INTERNATIONAL CONFERENCE ON BIOINFORMATICS OF GENOME REGULATION …, 2008
72008
A Delay Differential Equation approach to model the COVID-19 pandemic
IN Kiselev, IR Akberdin, FA Kolpakov
medRxiv, 2021
62021
A Mathematical Model Linking Ca2+-Dependent Signaling Pathway and Gene Expression Regulation in Human Skeletal Muscle
IR Akberdin, AY Vertyshev, SS Pintus, DV Popov, FA Kolpakov
Mathematical Biology & Bioinformatics 15 (1), 20-39, 2020
62020
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