Shandar Ahmad
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Analysis and prediction of DNA-binding proteins and their binding residues based on composition, sequence and structural information
S Ahmad, MM Gromiha, A Sarai
Bioinformatics 20 (4), 477-486, 2004
PSSM-based prediction of DNA binding sites in proteins
S Ahmad, A Sarai
BMC bioinformatics 6 (1), 33, 2005
ASAView: database and tool for solvent accessibility representation in proteins
S Ahmad, M Gromiha, H Fawareh, A Sarai
BMC bioinformatics 5 (1), 51, 2004
Real value prediction of solvent accessibility from amino acid sequence
S Ahmad, MM Gromiha, A Sarai
Proteins: Structure, Function, and Bioinformatics 50 (4), 629-635, 2003
Moments-based Prediction of DNA-binding Proteins
S Ahmad, A Sarai
Journal of Molecular Biology 341 (1), 65-71, 2004
Structural analysis of cation–π interactions in DNA binding proteins
MM Gromiha, C Santhosh, S Ahmad
International journal of biological macromolecules 34 (3), 203-211, 2004
NETASA: neural network based prediction of solvent accessibility
S Ahmad, MM Gromiha
Bioinformatics 18 (6), 819-824, 2002
Sequence and structural features of carbohydrate binding in proteins and assessment of predictability using a neural network
A Malik, S Ahmad
BMC Structural Biology 7 (1), 1, 2007
RVP-net: online prediction of real valued accessible surface area of proteins from single sequences
S Ahmad, MM Gromiha, A Sarai
Bioinformatics 19 (14), 1849-1851, 2003
Protein–DNA interactions: structural, thermodynamic and clustering patterns of conserved residues in DNA-binding proteins
S Ahmad, O Keskin, A Sarai, R Nussinov
Nucleic acids research 36 (18), 5922-5932, 2008
Partner-aware prediction of interacting residues in protein-protein complexes from sequence data
S Ahmad, K Mizuguchi
PLoS One 6 (12), e29104, 2011
Neural network‐based prediction of transmembrane β‐strand segments in outer membrane proteins
MM Gromiha, S Ahmad, M Suwa
Journal of computational chemistry 25 (5), 762-767, 2004
Distinct transcriptional regulatory modules underlie STAT3’s cell type-independent and cell type-specific functions
AP Hutchins, D Diez, Y Takahashi, S Ahmad, R Jauch, ML Tremblay, ...
Nucleic acids research 41 (4), 2155-2170, 2013
A comparison of shallow and deep learning methods for predicting cognitive performance of stroke patients from MRI lesion images
S Chauhan, L Vig, MDFD Grazia, M Corbetta, S Ahmad*, M Zorzi*
Frontiers in Neuroinformatics 2019, 2019
uORFs, reinitiation and alternative translation start sites in human mRNAs
AV Kochetov, S Ahmad, V Ivanisenko, OA Volkova, NA Kolchanov, ...
FEBS letters 582 (9), 1293-1297, 2008
Design and training of a neural network for predicting the solvent accessibility of proteins
S Ahmad, MM Gromiha
Journal of computational chemistry 24 (11), 1313-1320, 2003
TMBETA-NET: discrimination and prediction of membrane spanning β-strands in outer membrane proteins
MM Gromiha, S Ahmad, M Suwa
Nucleic acids research 33 (suppl_2), W164-W167, 2005
Sequence-Dependent Conformational Energy of DNA Derived from Molecular Dynamics Simulations: Toward Understanding the Indirect Readout Mechanism in Protein− DNA Recognition
MJ Ara˙zo-Bravo, S Fujii, H Kono, S Ahmad, A Sarai
Journal of the American Chemical Society 127 (46), 16074-16089, 2005
Profiles of microRNA networks in intestinal epithelial cells in a mouse model of colitis
J Lee, EJ Park, Y Yuki, S Ahmad, K Mizuguchi, KJ Ishii, M Shimaoka, ...
Scientific reports 5, 18174, 2015
Application of residue distribution along the sequence for discriminating outer membrane proteins
MM Gromiha, S Ahmad, M Suwa
Computational biology and chemistry 29 (2), 135-142, 2005
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