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Mikhail (Misha) Ignatov
Mikhail (Misha) Ignatov
Подтвержден адрес электронной почты в домене stonybrook.edu
Название
Процитировано
Процитировано
Год
Blind prediction of homo‐and hetero‐protein complexes: The CASP13‐CAPRI experiment
MF Lensink, G Brysbaert, N Nadzirin, S Velankar, RAG Chaleil, T Gerguri, ...
Proteins: Structure, Function, and Bioinformatics 87 (12), 1200-1221, 2019
1112019
Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment
MF Lensink, G Brysbaert, T Mauri, N Nadzirin, S Velankar, RAG Chaleil, ...
Proteins: Structure, Function, and Bioinformatics 89 (12), 1800-1823, 2021
762021
Protein–protein and protein–peptide docking with ClusPro server
A Alekseenko, M Ignatov, G Jones, M Sabitova, D Kozakov
Protein Structure Prediction, 157-174, 2020
312020
ClusPro LigTBM: Automated template-based small molecule docking
A Alekseenko, S Kotelnikov, M Ignatov, M Egbert, Y Kholodov, S Vajda, ...
Journal of molecular biology 432 (11), 3404-3410, 2020
212020
Template‐based modeling by ClusPro in CASP13 and the potential for using co‐evolutionary information in docking
KA Porter, D Padhorny, I Desta, M Ignatov, D Beglov, S Kotelnikov, Z Sun, ...
Proteins: Structure, Function, and Bioinformatics 87 (12), 1241-1248, 2019
192019
Monte Carlo on the manifold and MD refinement for binding pose prediction of protein–ligand complexes: 2017 D3R Grand Challenge
M Ignatov, C Liu, A Alekseenko, Z Sun, D Padhorny, S Kotelnikov, ...
Journal of computer-aided molecular design 33, 119-127, 2019
172019
ClusPro FMFT-SAXS: ultra-fast filtering using small-angle X-ray scattering data in protein docking
M Ignatov, A Kazennov, D Kozakov
Journal of molecular biology 430 (15), 2249-2255, 2018
162018
Sampling and refinement protocols for template-based macrocycle docking: 2018 D3R Grand Challenge 4
S Kotelnikov, A Alekseenko, C Liu, M Ignatov, D Padhorny, E Brini, ...
Journal of computer-aided molecular design 34, 179-189, 2020
152020
Light-mediated multi-target protein degradation using arylazopyrazole photoswitchable PROTACs (AP-PROTACs)
ED Vita
Chemical Communications 58 (78), 10933-10936, 2022
132022
High Accuracy Prediction of PROTAC Complex Structures
M Ignatov, A Jindal, S Kotelnikov, D Beglov, G Posternak, X Tang, ...
Journal of the American Chemical Society 145 (13), 7123-7135, 2023
82023
ClusPro in rounds 38 to 45 of CAPRI: Toward combining template‐based methods with free docking
D Padhorny, KA Porter, M Ignatov, A Alekseenko, D Beglov, S Kotelnikov, ...
Proteins: Structure, Function, and Bioinformatics 88 (8), 1082-1090, 2020
82020
Chauvot de Beauchene I
MF Lensink, G Brysbaert, N Nadzirin, S Velankar, RAG Chaleil, T Gerguri, ...
Maigret, B, 1200-1221, 2019
62019
Improved prediction of MHC-peptide binding using protein language models
N Hashemi, B Hao, M Ignatov, IC Paschalidis, P Vakili, S Vajda, ...
Frontiers in Bioinformatics 3, 2023
42023
Accurate ligand–protein docking in CASP15 using the ClusPro LigTBM server
S Kotelnikov, R Ashizawa, KI Popov, O Khan, M Ignatov, SX Li, M Hassan, ...
Proteins: Structure, Function, and Bioinformatics 91 (12), 1822-1828, 2023
22023
Numerically stable algorithm for Inverse Kinematics of 6R problem and its applications to macrocycles
X Cao, M Ignatov, G Jones, S Pollock, E Coutsias, D Kozakov
Proceedings of the 14th ACM International Conference on Bioinformatics …, 2023
2023
Methods for Structural Modeling of Biomolecular Interactions
M Ignatov
State University of New York at Stony Brook, 2021
2021
Ensemble building and statistical mechanics methods for MHC-peptide binding prediction
IV Grebenkin, AE Alekseenko, NA Gaivoronskiy, MG Ignatov, ...
Computer research and modeling 12 (6), 1383-1395, 2020
2020
Ultra-fast modeling of peptide-MHC interactions with 3D convolutional neural net
M Ignatov, E Coutsias, D Kozakov
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS 37, 48-48, 2019
2019
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Статьи 1–18