Alexey Gurevich
Alexey Gurevich
Senior Researcher @ Center for Algorithmic Biotechnology, Saint Petersburg State University
Подтвержден адрес электронной почты в домене spbu.ru - Главная страница
Название
Процитировано
Процитировано
Год
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing
A Bankevich, S Nurk, D Antipov, AA Gurevich, M Dvorkin, AS Kulikov, ...
Journal of computational biology 19 (5), 455-477, 2012
127102012
QUAST: quality assessment tool for genome assemblies
A Gurevich, V Saveliev, N Vyahhi, G Tesler
Bioinformatics 29 (8), 1072-1075, 2013
36662013
Assembling single-cell genomes and mini-metagenomes from chimeric MDA products
S Nurk, A Bankevich, D Antipov, AA Gurevich, A Korobeynikov, A Lapidus, ...
Journal of Computational Biology 20 (10), 714-737, 2013
8032013
Assembling genomes and mini-metagenomes from highly chimeric reads
S Nurk, A Bankevich, D Antipov, A Gurevich, A Korobeynikov, A Lapidus, ...
Annual International Conference on Research in Computational Molecular …, 2013
4832013
Critical assessment of metagenome interpretation—a benchmark of metagenomics software
A Sczyrba, P Hofmann, P Belmann, D Koslicki, S Janssen, J Dröge, ...
Nature methods 14 (11), 1063-1071, 2017
4032017
MetaQUAST: evaluation of metagenome assemblies
A Mikheenko, V Saveliev, A Gurevich
Bioinformatics 32 (7), 1088-1090, 2016
2482016
Versatile genome assembly evaluation with QUAST-LG
A Mikheenko, A Prjibelski, V Saveliev, D Antipov, A Gurevich
Bioinformatics 34 (13), i142-i150, 2018
2102018
Dereplication of peptidic natural products through database search of mass spectra
H Mohimani, A Gurevich, A Mikheenko, N Garg, LF Nothias, A Ninomiya, ...
Nature chemical biology 13 (1), 30-37, 2017
1262017
Feature-based molecular networking in the GNPS analysis environment
LF Nothias, D Petras, R Schmid, K Dührkop, J Rainer, A Sarvepalli, ...
Nature Methods 17 (9), 905-908, 2020
1052020
Dereplication of microbial metabolites through database search of mass spectra
H Mohimani, A Gurevich, A Shlemov, A Mikheenko, A Korobeynikov, ...
Nature communications 9 (1), 1-12, 2018
932018
ExSPAnder: a universal repeat resolver for DNA fragment assembly
AD Prjibelski, I Vasilinetc, A Bankevich, A Gurevich, T Krivosheeva, ...
Bioinformatics 30 (12), i293-i301, 2014
852014
Icarus: visualizer for de novo assembly evaluation
A Mikheenko, G Valin, A Prjibelski, V Saveliev, A Gurevich
Bioinformatics 32 (21), 3321-3323, 2016
552016
Versatile genome assembly evaluation with QUAST-LG. Bioinformatics 34: i142–i150
A Mikheenko, A Prjibelski, V Saveliev, D Antipov, A Gurevich
502018
metaFlye: scalable long-read metagenome assembly using repeat graphs
M Kolmogorov, DM Bickhart, B Behsaz, A Gurevich, M Rayko, SB Shin, ...
Nature Methods 17 (11), 1103-1110, 2020
492020
Increased diversity of peptidic natural products revealed by modification-tolerant database search of mass spectra
A Gurevich, A Mikheenko, A Shlemov, A Korobeynikov, H Mohimani, ...
Nature microbiology 3 (3), 319-327, 2018
432018
Assembling short reads from jumping libraries with large insert sizes
I Vasilinetc, AD Prjibelski, A Gurevich, A Korobeynikov, PA Pevzner
Bioinformatics 31 (20), 3262-3268, 2015
362015
MetaMiner: a scalable peptidogenomics approach for discovery of ribosomal peptide natural products with blind modifications from microbial communities
L Cao, A Gurevich, KL Alexander, CB Naman, T Leão, E Glukhov, ...
Cell systems 9 (6), 600-608. e4, 2019
23*2019
Spatial Molecular Architecture of the Microbial Community of a Peltigera Lichen
N Garg, Y Zeng, A Edlund, AV Melnik, LM Sanchez, H Mohimani, ...
Msystems 1 (6), e00139-16, 2016
202016
Metabolic fingerprints from the human oral microbiome reveal a vast knowledge gap of secreted small peptidic molecules
A Edlund, N Garg, H Mohimani, A Gurevich, X He, W Shi, PC Dorrestein, ...
Msystems 2 (4), e00058-17, 2017
172017
TandemTools: mapping long reads and assessing/improving assembly quality in extra-long tandem repeats
A Mikheenko, AV Bzikadze, A Gurevich, KH Miga, PA Pevzner
Bioinformatics 36 (Supplement_1), i75-i83, 2020
16*2020
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