Vladimír Ulman
Vladimír Ulman
IT4Innovations National Supercomputing Center & Masaryk university
Verified email at - Homepage
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A benchmark for comparison of cell tracking algorithms
M Maška, V Ulman, D Svoboda, P Matula, P Matula, C Ederra, A Urbiola, ...
Bioinformatics 30 (11), 1609-1617, 2014
An objective comparison of cell-tracking algorithms
V Ulman, M Maška, KEG Magnusson, O Ronneberger, C Haubold, ...
Nature methods 14 (12), 1141-1152, 2017
MitoGen: A framework for generating 3D synthetic time-lapse sequences of cell populations in fluorescence microscopy
D Svoboda, V Ulman
IEEE transactions on medical imaging 36 (1), 310-321, 2016
Bioinformatic and image analyses of the cellular localization of the apoptotic proteins endonuclease G, AIF, and AMID during apoptosis in human cells
M Vařecha, J Amrichová, M Zimmermann, V Ulman, E Lukášová, ...
Apoptosis 12 (7), 1155-1171, 2007
Virtual cell imaging: A review on simulation methods employed in image cytometry
V Ulman, D Svoboda, M Nykter, M Kozubek, P Ruusuvuori
Cytometry Part A 89 (12), 1057-1072, 2016
Regionalized tissue fluidization is required for epithelial gap closure during insect gastrulation
A Jain, V Ulman, A Mukherjee, M Prakash, MB Cuenca, LG Pimpale, ...
Nature communications 11 (1), 1-13, 2020
Generation of Synthetic Image Datasets for Time-Lapse Fluorescence Microscopy
D Svoboda, V Ulman
Proceedings of 9th International Conference on Image Analysis and Recognition, 2012
FiloGen: A Model-Based Generator of Synthetic 3D Time-Lapse Sequences of Single Motile Cells with Growing and Branching Filopodia
DV Sorokin, I Peterlík, V Ulman, D Svoboda, T Nečasová, K Morgaenko, ...
IEEE Transactions on Medical Imaging, 2018
Prediction of localization and interactions of apoptotic proteins
M Vařecha, M Zimmermann, J Amrichová, V Ulman, P Matula, M Kozubek
Journal of biomedical science 16 (1), 59, 2009
Estimating Large Local Motion in Live-Cell Imaging Using Variational Optical Flow
J Hubený, V Ulman, P Matula
VISAPP 2007 Second International Conference On Computer Vision Theory And …, 2007
Towards a Realistic Distribution of Cells in Synthetically Generated 3D Cell Populations
D Svoboda, V Ulman
Image Analysis and Processing–ICIAP 2013, 429-438, 2013
Distinct patterns of histone methylation and acetylation in human interphase nuclei
M Skalnikova, E Bártová, V Ulman, P Matula, D Svoboda, A Harnicarová, ...
Physiological research 56 (6), 797, 2007
Virtual microscope interface to high resolution histological images
J Feit, L Matyska, V Ulman, L Hejtmánek, H Jedličková, M Ježová, ...
Diagnostic pathology 3 (Suppl 1), S10, 2008
Model-based generation of synthetic 3D time-lapse sequences of motile cells with growing filopodia
DV Sorokin, I Peterlik, V Ulman, D Svoboda, M Maška
Biomedical Imaging (ISBI 2017), 2017 IEEE 14th International Symposium on …, 2017
TRAgen: A Tool for Generation of Synthetic Time-Lapse Image Sequences of Living Cells
V Ulman, Z Orémuš, D Svoboda
Image Analysis and Processing—ICIAP 2015, 623-634, 2015
Vascular network formation in silico using the extended cellular Potts model
D Svoboda, V Ulman, P Kováč, B Šalingová, L Tesařová, IK Koutná, ...
2016 IEEE International Conference on Image Processing (ICIP), 3180-3183, 2016
On Proper Simulation of Chromatin Structure in Static Images As Well As in Time-Lapse Sequences in Fluorescence Microscopy
D Svoboda, V Ulman, I Peterlík
International Symposium on BIOMEDICAL IMAGING: From Nano to Macro (ISBI), 2015
Regionalized tissue fluidization by an actomyosin cable is required for epithelial gap closure during insect gastrulation
A Jain, V Ulman, A Mukherjee, M Prakash, L Pimpale, S Muenster, ...
bioRxiv, 744193, 2019
On proper simulation of phenomena influencing image formation in fluorescence microscopy
D Svoboda, V Ulman, L Matyska, M Maška, J Bella, S Stejskal
2014 IEEE International Conference on Image Processing (ICIP), 3944-3948, 2014
Fast Anisotropic Filtering and Performance Evaluation Tool for Optical Flow in Biomedical Image Analysis (dissertation thesis)
V Ulman
Brno: Masarykova Univerzita, 2011
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