Cedric Chauve

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Eric TannierINRIA, Université de Lyon 1Verified email at inria.fr
Anne BergeronComputer Science, Université du Québec à MontréalVerified email at uqam.ca
Yann PontySenior researcher at CNRS & Ecole PolytechniqueVerified email at lix.polytechnique.fr
Faraz HachAssistant Professor at University of British ColumbiaVerified email at ubc.ca
Annie ChateauMaître de conférences, Université de MontpellierVerified email at lirmm.fr
Murray PattersonAssistant Professor, Georgia State UniversityVerified email at cs.gsu.edu
Ashok RajaramanAccenture Inc.Verified email at accenture.com
Sylvie HamelProfesseure titulaire, Informatique et recherche opérationnelle, Université de MontréalVerified email at umontreal.ca
Guillaume FertinNantes Université, LS2N, FranceVerified email at univ-nantes.fr
Christophe PaulCNRS LIRMMVerified email at lirmm.fr
Jan ManuchComputer Science, University of British ColumbiaVerified email at cs.ubc.ca
Guillaume BlinFull Professor of Computer Science, Université de Bordeaux, FranceVerified email at labri.fr
Celine ScornavaccaInstitut des Sciences de l'Evolution, MontpellierVerified email at umontpellier.fr
Nina LuhmannUniversity of MainzVerified email at uni-mainz.de
Julien Allalimaître de conférences informatique, LaBRI, IPBVerified email at labri.fr
Andrew McPhersonPost Doctoral Fellow, University of British ColumbiaVerified email at bccrc.ca
S. Cenk SahinalpSenior Investigator, Cancer Data Science Lab, National Cancer Institute, NIHVerified email at nih.gov
Leonid ChindelevitchImperial CollegeVerified email at ic.ac.uk
Ehsan HaghshenasSimon Fraser UniversityVerified email at sfu.ca
William HsiaoBCCDC Public Health LaboratoryVerified email at sfu.ca

Cedric Chauve

Professor of Mathematics, Simon Fraser University

Verified email at sfu.ca - Homepage

Computational Biology Algorithms Design and Analysis Discrete Mathematics


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Highly evolvable malaria vectors: The genomes of 16 Anopheles mosquitoes DE Neafsey, RM Waterhouse, MR Abai, SS Aganezov, MA Alekseyev, ... Science 347 (6217), 1258522, 2015	574	2015
FragAnchor: a large-scale predictor of glycosylphosphatidylinositol anchors in eukaryote protein sequences by qualitative scoring G Poisson, C Chauve, X Chen, A Bergeron Genomics, proteomics & bioinformatics 5 (2), 121-130, 2007	147	2007
Identification, expression, and evolutionary analyses of plant lipocalins JB Frenette Charron, F Ouellet, M Pelletier, J Danyluk, C Chauve, ... Plant Physiology 139 (4), 2017-2028, 2005	139	2005
A methodological framework for the reconstruction of contiguous regions of ancestral genomes and its application to mammalian genomes C Chauve, E Tannier PLoS computational biology 4 (11), e1000234, 2008	112	2008
ecceTERA: comprehensive gene tree-species tree reconciliation using parsimony E Jacox, C Chauve, GJ Szöllősi, Y Ponty, C Scornavacca Bioinformatics 32 (13), 2056-2058, 2016	97	2016
ANGES: reconstructing ANcestral GEnomeS maps BR Jones, A Rajaraman, E Tannier, C Chauve Bioinformatics 28 (18), 2388-2390, 2012	82	2012
Computing Common Intervals of K Permutations, with Applications to Modular Decomposition of Graphs A Bergeron, C Chauve, F De Montgolfier, M Raffinot Algorithms–ESA 2005: 13th Annual European Symposium, Palma de Mallorca …, 2005	73	2005
Reconstructing ancestral gene orders using conserved intervals A Bergeron, M Blanchette, A Chateau, C Chauve Algorithms in Bioinformatics: 4th International Workshop, WABI 2004, Bergen …, 2004	73	2004
Gene family evolution by duplication, speciation, and loss C Chauve, JP Doyon, N El-Mabrouk Journal of Computational Biology 15 (8), 1043-1062, 2008	68	2008
CoLoRMap: correcting long reads by mapping short reads E Haghshenas, F Hach, SC Sahinalp, C Chauve Bioinformatics 32 (17), i545-i551, 2016	64	2016
The breakpoint distance for signed sequences G Blin, G Fertin, C Chauve 1st conference on algorithms and computational methods for biochemical and …, 2004	64	2004
Perfect sorting by reversals is not always difficult S Bérard, A Bergeron, C Chauve, C Paul IEEE/ACM transactions on computational biology and bioinformatics 4 (1), 4-16, 2007	63	2007
New perspectives on gene family evolution: losses in reconciliation and a link with supertrees C Chauve, N El-Mabrouk Research in Computational Molecular Biology: 13th Annual International …, 2009	60	2009
On the properties of sequences of reversals that sort a signed permutation A Bergeron, C Chauve, T Hartman, K St-Onge Proceedings of JOBIM 2, 99-108, 2002	60	2002
MentaLiST–A fast MLST caller for large MLST schemes P Feijao, HT Yao, D Fornika, J Gardy, W Hsiao, C Chauve, ... Microbial genomics 4 (2), 2018	58	2018
Space of gene/species trees reconciliations and parsimonious models JP Doyon, C Chauve, S Hamel Journal of Computational Biology 16 (10), 1399-1418, 2009	51	2009
Comparing genomes with duplications: a computational complexity point of view G Blin, C Chauve, G Fertin, R Rizzi, S Vialette IEEE/ACM Transactions on Computational Biology and Bioinformatics 4 (4), 523-534, 2007	51	2007
Conservation of combinatorial structures in evolution scenarios S Bérard, A Bergeron, C Chauve RECOMB Workshop on Comparative Genomics, 1-14, 2004	51	2004
Computing Common Intervals of K Permutations, with Applications to Modular Decomposition of Graphs A Bergeron, C Chauve, F De Montgolfier, M Raffinot SIAM Journal on Discrete Mathematics 22 (3), 1022-1039, 2008	46	2008
HASLR: fast hybrid assembly of long reads E Haghshenas, H Asghari, J Stoye, C Chauve, F Hach Iscience 23 (8), 2020	45	2020

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