Matej Praprotnik
Matej Praprotnik
Laboratory for Molecular Modeling, National Institute of Chemistry, Ljubljana, Slovenia
Подтвержден адрес электронной почты в домене cmm.ki.si - Главная страница
Название
Процитировано
Процитировано
Год
Multiscale simulation of soft matter: From scale bridging to adaptive resolution
M Praprotnik, LD Site, K Kremer
Annu. Rev. Phys. Chem. 59, 545-571, 2008
4452008
Adaptive resolution molecular-dynamics simulation: Changing the degrees of freedom on the fly
M Praprotnik, L Delle Site, K Kremer
The Journal of chemical physics 123 (22), 224106, 2005
3912005
Adaptive resolution scheme for efficient hybrid atomistic-mesoscale molecular dynamics simulations of dense liquids
M Praprotnik, L Delle Site, K Kremer
Physical Review E 73 (6), 066701, 2006
1462006
Temperature dependence of water vibrational spectrum: a molecular dynamics simulation study
M Praprotnik, D Janežič, J Mavri
The Journal of Physical Chemistry A 108 (50), 11056-11062, 2004
1432004
Adaptive resolution simulation of liquid water
M Praprotnik, S Matysiak, L Delle Site, K Kremer, C Clementi
Journal of Physics: Condensed Matter 19 (29), 292201, 2007
1402007
Coupling different levels of resolution in molecular simulations
S Poblete, M Praprotnik, K Kremer, L Delle Site
The Journal of chemical physics 132 (11), 114101, 2010
1152010
Transport properties controlled by a thermostat: An extended dissipative particle dynamics thermostat
C Junghans, M Praprotnik, K Kremer
Soft Matter 4 (1), 156-161, 2008
1122008
Concurrent triple-scale simulation of molecular liquids
R Delgado-Buscalioni, K Kremer, M Praprotnik
The Journal of chemical physics 128 (11), 114110, 2008
1112008
A macromolecule in a solvent: Adaptive resolution molecular dynamics simulation
M Praprotnik, L Delle Site, K Kremer
The Journal of chemical physics 126 (13), 04B603, 2007
1042007
Molecular dynamics integration and molecular vibrational theory. III. The infrared spectrum of water
M Praprotnik, D Janežič
The Journal of chemical physics 122 (17), 174103, 2005
882005
Modeling diffusive dynamics in adaptive resolution simulation of liquid water
S Matysiak, C Clementi, M Praprotnik, K Kremer, L Delle Site
The Journal of chemical physics 128 (2), 024503, 2008
832008
Coupling atomistic and continuum hydrodynamics through a mesoscopic model: application to liquid water
R Delgado-Buscalioni, K Kremer, M Praprotnik
The Journal of chemical physics 131 (24), 244107, 2009
802009
Adaptive resolution simulation of an atomistic protein in MARTINI water
J Zavadlav, MN Melo, SJ Marrink, M Praprotnik
The Journal of chemical physics 140 (5), 054114, 2014
752014
Adaptive molecular resolution via a continuous change of the phase space dimensionality
M Praprotnik, K Kremer, L Delle Site
Physical Review E 75 (1), 017701, 2007
692007
Molecular dynamics integration and molecular vibrational theory. I. New symplectic integrators
D Janežič, M Praprotnik, F Merzel
The Journal of chemical physics 122 (17), 174101, 2005
642005
Molecular systems with open boundaries: Theory and simulation
L Delle Site, M Praprotnik
Physics Reports 693, 1-56, 2017
522017
Adaptive resolution simulation of a DNA molecule in salt solution
J Zavadlav, R Podgornik, M Praprotnik
Journal of chemical theory and computation 11 (10), 5035-5044, 2015
522015
Adaptive resolution simulation of MARTINI solvents
J Zavadlav, MN Melo, AV Cunha, AH De Vries, SJ Marrink, M Praprotnik
Journal of chemical theory and computation 10 (6), 2591-2598, 2014
522014
ENZO: a web tool for derivation and evaluation of kinetic models of enzyme catalyzed reactions
S Bevc, J Konc, J Stojan, M Hodošček, M Penca, M Praprotnik, D Janežič
PLoS One 6 (7), e22265, 2011
482011
Fractional dimensions of phase space variables: a tool for varying the degrees of freedom of a system in a multiscale treatment
M Praprotnik, K Kremer, L Delle Site
Journal of Physics A: Mathematical and Theoretical 40 (15), F281, 2007
482007
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Статьи 1–20