Emre Karakoc
Emre Karakoc
Principal Bioinformatician, Wellcome Sanger Institute
Verified email at sanger.ac.uk
Cited by
Cited by
Sporadic autism exomes reveal a highly interconnected protein network of de novo mutations
BJ O’Roak, L Vives, S Girirajan, E Karakoc, N Krumm, BP Coe, R Levy, ...
Nature 485 (7397), 246-250, 2012
Exome sequencing in sporadic autism spectrum disorders identifies severe de novo mutations
BJ O'Roak, P Deriziotis, C Lee, L Vives, JJ Schwartz, S Girirajan, ...
Nature genetics 43 (6), 585, 2011
Exome sequencing in sporadic autism spectrum disorders identifies severe de novo mutations
BJ O'Roak, P Deriziotis, C Lee, L Vives, JJ Schwartz, S Girirajan, ...
Nature genetics 43 (6), 585, 2011
Insights into hominid evolution from the gorilla genome sequence
A Scally, JY Dutheil, LDW Hillier, GE Jordan, I Goodhead, J Herrero, ...
Nature 483 (7388), 169-175, 2012
The bonobo genome compared with the chimpanzee and human genomes
K Prüfer, K Munch, I Hellmann, K Akagi, JR Miller, B Walenz, S Koren, ...
Nature 486 (7404), 527, 2012
RNA-RNA interaction prediction and antisense RNA target search
C Alkan, E Karakoc, JH Nadeau, SC Sahinalp, K Zhang
Journal of Computational Biology 13 (2), 267-282, 2006
Detection of structural variants and indels within exome data
E Karakoc, C Alkan, BJ O'roak, MY Dennis, L Vives, K Mark, MJ Rieder, ...
Nature methods 9 (2), 176, 2012
Altered splicing of ATP6AP2 causes X-linked parkinsonism with spasticity (XPDS)
O Korvatska, NS Strand, JD Berndt, T Strovas, DH Chen, JB Leverenz, ...
Human molecular genetics 22 (16), 3259-3268, 2013
Transmission disequilibrium of small CNVs in simplex autism
N Krumm, BJ O’Roak, E Karakoc, K Mohajeri, B Nelson, L Vives, ...
The American Journal of Human Genetics 93 (4), 595-606, 2013
PICKY: a novel SVD-based NMR spectra peak picking method
B Alipanahi, X Gao, E Karakoc, L Donaldson, M Li
Bioinformatics 25 (12), i268-i275, 2009
Genomic resources for wild populations of the house mouse, Mus musculus and its close relative Mus spretus
B Harr, E Karakoc, R Neme, M Teschke, C Pfeifle, Ž Pezer, H Babiker, ...
Scientific data 3 (1), 1-14, 2016
Comparative QSAR-and fragments distribution analysis of drugs, druglikes, metabolic substances, and antimicrobial compounds
E Karakoc, SC Sahinalp, A Cherkasov
Journal of chemical information and modeling 46 (5), 2167-2182, 2006
The evolution and functional impact of human deletion variants shared with archaic hominin genomes
YL Lin, P Pavlidis, E Karakoc, J Ajay, O Gokcumen
Molecular biology and evolution 32 (4), 1008-1019, 2015
Distance based algorithms for small biomolecule classification and structural similarity search
E Karakoc, A Cherkasov, SC Sahinalp
Bioinformatics 22 (14), e243-e251, 2006
Error tolerant NMR backbone resonance assignment and automated structure generation
B Alipanahi, X Gao, E Karakoc, SC Li, F Balbach, G Feng, L Donaldson, ...
Journal of bioinformatics and computational biology 9 (01), 15-41, 2011
Dual-stressor selection alters eco-evolutionary dynamics in experimental communities
T Hiltunen, J Cairns, J Frickel, M Jalasvuori, J Laakso, V Kaitala, S Künzel, ...
Nature ecology & evolution 2 (12), 1974-1981, 2018
smyRNA: a novel Ab initio ncRNA gene finder
R Salari, C Aksay, E Karakoc, PJ Unrau, I Hajirasouliha, SC Sahinalp
PloS one 4 (5), e5433, 2009
taveRNA: a web suite for RNA algorithms and applications
C Aksay, R Salari, E Karakoc, C Alkan, SC Sahinalp
Nucleic acids research 35 (suppl_2), W325-W329, 2007
ORMAN: optimal resolution of ambiguous RNA-Seq multimappings in the presence of novel isoforms
P Dao, I Numanagić, YY Lin, F Hach, E Karakoc, N Donmez, C Collins, ...
Bioinformatics 30 (5), 644-651, 2014
RNA secondary structure prediction via energy density minimization
C Alkan, E Karakoc, SC Sahinalp, P Unrau, HA Ebhardt, K Zhang, ...
Annual International Conference on Research in Computational Molecular …, 2006
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Articles 1–20